BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE03RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1683 0.0
>3x_Contig1571
Length = 13536
Score = 1683 bits (849), Expect = 0.0
Identities = 867/872 (99%), Gaps = 1/872 (0%)
Strand = Plus / Plus
Query: 49 aggtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccagg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aggtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccagg 702
Query: 109 atcctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atcctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatt 762
Query: 169 ttcgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttcgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacg 822
Query: 229 cttcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cttcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatt 882
Query: 289 tgaaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tgaaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcag 942
Query: 349 aagaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aagaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgcta 1002
Query: 409 aaactggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aaactggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccga 1062
Query: 469 ccggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ccggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttatt 1122
Query: 529 taggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 taggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatca 1182
Query: 589 tcactgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 tcactgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatc 1242
Query: 649 gtgtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatgaaag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 gtgtcgctactaacacactgaaatcaggtcaagtcgggtatttggtacctggcatgaaag 1302
Query: 709 aatctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgattactg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 aatctaaggatgccaagattggtgatactttgatgcatctcggtaaagaatcgattactg 1362
Query: 769 aagtgttaccaggatttgaagaaccaaaacccatggtcttcgtaagagcttttccctgct 828
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 1363 aagtgttaccaggatttgaagaaccaaaacccatggtcttcgtaggagc-tttccctgct 1421
Query: 829 gatggngccgaattcaaagcgttagacgatgatattagtagactcgtctttaatgataga 888
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1422 gatggggccgaattcaaagcgttagacgatgatattagtagactcgtcttaaatgataga 1481
Query: 889 tcagtgttcctccaaagagaaacgtcaaatgc 920
||||||| ||||||||||||||||||||||||
Sbjct: 1482 tcagtgtccctccaaagagaaacgtcaaatgc 1513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5507
Number of Sequences: 1807
Number of extensions: 5507
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)