BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE04FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1590 0.0
>3x_Contig1798
Length = 38968
Score = 1590 bits (802), Expect = 0.0
Identities = 830/836 (99%), Gaps = 3/836 (0%)
Strand = Plus / Minus
Query: 86 cactcaagaaatacggaagtgaagaatcatcttcgttgtcgctgttgtgatttgatttgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18174 cactcaagaaatacggaagtgaagaatcatcttcgttgtcgctgttgtgatttgatttgg 18115
Query: 146 aattaggtaaatataatgttccctttaaagcaccagggtctaagtcatatgctagggatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18114 aattaggtaaatataatgttccctttaaagcaccagggtctaagtcatatgctagggatt 18055
Query: 206 ccatagaatgaccaatgtcatcgaattgcagagttgagtctttacctgcgtatttcaaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18054 ccatagaatgaccaatgtcatcgaattgcagagttgagtctttacctgcgtatttcaaaa 17995
Query: 266 gaacttgagcacctcctggatgcttgtgaaggaaactggttatatcgtacactttgccat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17994 gaacttgagcacctcctggatgcttgtgaaggaaactggttatatcgtacactttgccat 17935
Query: 326 gaatcacggtccaacagtcggaccgcgaactatgtcgtgctacttcatccatagttatta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17934 gaatcacggtccaacagtcggaccgcgaactatgtcgtgctacttcatccatagttatta 17875
Query: 386 gcgggtctctcattttaaataaatgaaatgctatgaatgctgtaccaaaaaaagaataaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17874 gcgggtctctcattttaaataaatgaaatgctatgaatgctgtaccaaaaaaagaataaa 17815
Query: 446 attctcagaaaatctaagcagaaacacaaaaataatcaccaatcaattgaacttccacga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17814 attctcagaaaatctaagcagaaacacaaaaataatcaccaatcaattgaacttccacga 17755
Query: 506 atatatagtgacggactgttgatcgattagtcgaaagcaacaaaacggaaacaaaacaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17754 atatatagtgacggactgttgatcgattagtcgaaagcaacaaaacggaaacaaaacaat 17695
Query: 566 tgttataatattgaacccaaaaaaaaaaaaaaaattgaatgggtcaatctagttgatagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17694 tgttataatattgaacccaaaaaaaaaaaaaaaattgaatgggtcaatctagttgatagt 17635
Query: 626 actgttcctcgtggaagcgatatagcagagctagcaataataaacttgaaaacaacagta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17634 actgttcctcgtggaagcgatatagcagagctagcaataataaacttgaaaacaacagta 17575
Query: 686 aaagcaatcaatgtctcatccaatgggccccctggtaataatatcagtaattacagtgat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17574 aaagcaatcaatgtctcatccaatgggccccctggtaataatatcagtaattacagtgat 17515
Query: 746 tcctttatattctctagttggagatacagctggtgatatacgtaacaattggacggtaac 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17514 tcctttatattctctagttggagatacagctggtgatatacgtaacaattggacggtaac 17455
Query: 806 aaatggaaaag-aaaagatctgtgatgagtggangaatgcctgttgcctgtataatagta 864
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 17454 aaatggaaaagaaaaagatctgtgatgagtggaggaatgcctgttgcctgtataatagta 17395
Query: 865 ctcgnacagatgtaaaataaat-acagac-ccaacacagtatgcactcacggcaaa 918
|||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 17394 ctcgaacagatgtaaaataaataacagacacaaacacagtatgcactcacggcaaa 17339
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,591
Number of Sequences: 1807
Number of extensions: 17591
Number of successful extensions: 2589
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)