BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZE04RM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1605                                                        1576   0.0  

>3x_Contig1605 
          Length = 12373

 Score = 1576 bits (795), Expect = 0.0
 Identities = 854/867 (98%), Gaps = 7/867 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    ctttaggtatttgacttttttctttgaacttttagcaacttcgtgtttatccaattggtc 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10988 ctttaggtatttgacttttttctttgaacttttagcaacttcgtgtttatccaattggtc 10929

                                                                         
Query: 108   tctagaattggattgatacggtaccgacccaagccttctgaatacattcctgtattcaga 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10928 tctagaattggattgatacggtaccgacccaagccttctgaatacattcctgtattcaga 10869

                                                                         
Query: 168   atattctaaccaacagttccatttgatacctcgcttatcccaaatacatcttttggccaa 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10868 atattctaaccaacagttccatttgatacctcgcttatcccaaatacatcttttggccaa 10809

                                                                         
Query: 228   tgcatccagtctggtaattgaatcatgggtcgggatcgttttgatgttgctattcatgat 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10808 tgcatccagtctggtaattgaatcatgggtcgggatcgttttgatgttgctattcatgat 10749

                                                                         
Query: 288   tgcacggcatttagcgatccaataattcatcacaacatgccctcccgtatgctctttaag 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10748 tgcacggcatttagcgatccaataattcatcacaacatgccctcccgtatgctctttaag 10689

                                                                         
Query: 348   attgataaggagcatctgatatactctgctgaactccgaactatatccctgcctgacaag 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10688 attgataaggagcatctgatatactctgctgaactccgaactatatccctgcctgacaag 10629

                                                                         
Query: 408   acatttgaaaagaaggtcataacaatggagagttggttcaacttcaaacgttgctttaaa 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10628 acatttgaaaagaaggtcataacaatggagagttggttcaacttcaaacgttgctttaaa 10569

                                                                         
Query: 468   ggtgttcactgtcataatacacatgtccattctgcctttttcggagaactgccttagata 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10568 ggtgttcactgtcataatacacatgtccattctgcctttttcggagaactgccttagata 10509

                                                                         
Query: 528   ctcttcaaggaaaaaaggatctttcacgcgaaaatttaagtgtcttgcatactccataag 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10508 ctcttcaaggaaaaaaggatctttcacgcgaaaatttaagtgtcttgcatactccataag 10449

                                                                         
Query: 588   cttccaggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgat 647
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10448 cttccaggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgat 10389

                                                                         
Query: 648   ttttgtatcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaat 707
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10388 ttttgtatcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaat 10329

                                                                         
Query: 708   gtcttcctcttctaggattccgtataatagatggtatgttaaaggaaactcctctt--ca 765
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |
Sbjct: 10328 gtcttcctcttctaggattccgtataatagatggtatgttaaagg-aactcctctttcaa 10270

                                                                         
Query: 766   ccattttctct-aaaatatagctcttgatatattatccttcaaaag-aaataacaggtg- 822
             ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 10269 ccattttctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgt 10210

                                                                         
Query: 823   tcccagntatcacatctgcagatatattctcttttttcatccttnccagattaaatattg 882
             ||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 10209 tccaagttatcacatctgcagatatattctcttttttcatcctttccagataaaatattg 10150

                                        
Query: 883   cttcgcgatatggggagntgttgttta 909
             ||||||||||| ||||| |||||||||
Sbjct: 10149 cttcgcgatat-gggagttgttgttta 10124


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7245
Number of Sequences: 1807
Number of extensions: 7245
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)