BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE07FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1548 0.0
>3x_Contig1589
Length = 10239
Score = 1548 bits (781), Expect = 0.0
Identities = 810/816 (99%), Gaps = 3/816 (0%)
Strand = Plus / Plus
Query: 86 ttcgatagtttcctgaattttctgcttatctttttcaatggttttaatcattgttttcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7414 ttcgatagtttcctgaattttctgcttatctttttcaatggttttaatcattgttttcaa 7473
Query: 146 tgccgtttcctttttctctacactctcaatcatactcattacctctgggttcaccttcct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7474 tgccgtttcctttttctctacactctcaatcatactcattacctctgggttcaccttcct 7533
Query: 206 tcttaagctctgaaagctttcggctaaatcggaaccacgtttcttgtactgatctagatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534 tcttaagctctgaaagctttcggctaaatcggaaccacgtttcttgtactgatctagatt 7593
Query: 266 aatgttcttattctgtgtcaagatgctattgaccatggaagtatcttccaaccaatcatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7594 aatgttcttattctgtgtcaagatgctattgaccatggaagtatcttccaaccaatcatt 7653
Query: 326 ttcgttgattaaattttcaatggcttgatcgatgccaaaagtgttattcttgtatttatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654 ttcgttgattaaattttcaatggcttgatcgatgccaaaagtgttattcttgtatttatg 7713
Query: 386 caagtcgtttgtaatcttctgtaaatccacttccgaagttgaaagtagatggttcttatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7714 caagtcgtttgtaatcttctgtaaatccacttccgaagttgaaagtagatggttcttatt 7773
Query: 446 tttaagcaataactctagttctgatatctcatcttccattcctgaaagtctggacatttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7774 tttaagcaataactctagttctgatatctcatcttccattcctgaaagtctggacatttc 7833
Query: 506 ctcttgtaaaatactgtgtacttcgtgaagttcagactttttggtcctcacaacgccctc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7834 ctcttgtaaaatactgtgtacttcgtgaagttcagactttttggtcctcacaacgccctc 7893
Query: 566 gtactcattacacgttgtttccagttctgcaagccttttctctgcaattgatacttcatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7894 gtactcattacacgttgtttccagttctgcaagccttttctctgcaattgatacttcatt 7953
Query: 626 ttgggcgttagaaatatctgtgtgtagctgttctgtgtcaaaactcaagttctgatattc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7954 ttgggcgttagaaatatctgtgtgtagctgttctgtgtcaaaactcaagttctgatattc 8013
Query: 686 atcanacagcttagccgtatcagtgtctaa-ttttccacttctgcagagacttcagagag 744
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8014 atcaaacagcttagccgtatcagtgtctaatttttccacttctgcagagacttcagagag 8073
Query: 745 attagcttctaactgcctgagctttgaacccttgtcttatttgaa-tcttccatatctct 803
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 8074 attagcttctaactgcctgagctttgaacccttgtctttattgaattcttccatatctct 8133
Query: 804 ttgaatgtttattatctcagtttcgtattctttggtcaatgatgtcaactgacatatgtg 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8134 ttgaatgtttattatctcagtttcgtattctttggtcaatgatgtcaactgacatatgtg 8193
Query: 864 catttcacaggtttttcaattgagttagaatttctt 899
||||||||| ||||||||||||||||||||||||||
Sbjct: 8194 catttcaca-gtttttcaattgagttagaatttctt 8228
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7222
Number of Sequences: 1807
Number of extensions: 7222
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)