BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZE07RM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig923                                                         1544   0.0  

>3x_Contig923 
          Length = 2348

 Score = 1544 bits (779), Expect = 0.0
 Identities = 835/852 (98%), Gaps = 2/852 (0%)
 Strand = Plus / Plus

                                                                       
Query: 45  tggcagctttctttagatgatccagtggaggagtattagctagttctgttaatttgtgat 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tggcagctttctttagatgatccagtggaggagtattagctagttctgttaatttgtgat 165

                                                                       
Query: 105 actcagtggtgcgtataggtgttatggactttctttccgccaaccacagcaataaagact 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 actcagtggtgcgtataggtgttatggactttctttccgccaaccacagcaataaagact 225

                                                                       
Query: 165 ccatatcgtcactagaaagcgatgattgaatagcttcaattgaaggatgagtgtttccat 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ccatatcgtcactagaaagcgatgattgaatagcttcaattgaaggatgagtgtttccat 285

                                                                       
Query: 225 gcattagtctggtgtgctcctcatttggaagaagaacatgatcttttgacttagcacatt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gcattagtctggtgtgctcctcatttggaagaagaacatgatcttttgacttagcacatt 345

                                                                       
Query: 285 ctttcaacctattaatatctggactttcagctttgcatttcagatcaattagatccttat 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctttcaacctattaatatctggactttcagctttgcatttcagatcaattagatccttat 405

                                                                       
Query: 345 caggtattaccgagagtttgtgatttgcagcaattttttccactttatcgatagaaggat 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caggtattaccgagagtttgtgatttgcagcaattttttccactttatcgatagaaggat 465

                                                                       
Query: 405 tcagtagctcatggtaatctttgttagatattaaaatatggtcgtgagtggtagctaact 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcagtagctcatggtaatctttgttagatattaaaatatggtcgtgagtggtagctaact 525

                                                                       
Query: 465 gttggacgtcttcgatacttggttcagtgagttgggacaatttactcttcgttagtacag 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gttggacgtcttcgatacttggttcagtgagttgggacaatttactcttcgttagtacag 585

                                                                       
Query: 525 ttaatccttttgcatctgctttggcctgcaaatattcttcagacgggctttccaatttag 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttaatccttttgcatctgctttggcctgcaaatattcttcagacgggctttccaatttag 645

                                                                       
Query: 585 cttttatatcagtcaattgtgactgtttcaatacctgaagtcctctggactgggcatggt 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cttttatatcagtcaattgtgactgtttcaatacctgaagtcctctggactgggcatggt 705

                                                                       
Query: 645 ttgttaatgcctcaacatcccgtttcctcaaattttcatactcatcaatgtcgataatgg 704
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttgttaatgcctcaacatccggtttcctcaaattttcatactcatcaatgtcgataatgg 765

                                                                       
Query: 705 ttttttgaagcttgtgagccttactctcgagatatgacagggacggacttttcgaagcat 764
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 766 ttttttgaagcttgtgagccttactctcgagatatgacagggacggactttcggaagcat 825

                                                                       
Query: 765 gaagcanattctcatagtcctttttacttaacgcagngtagnctttactttct-atgatt 823
           |||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 826 gaagcaaattctcatagtcctttttacttaacgcagtgtagtctttactttctaatgatt 885

                                                                       
Query: 824 tttt-aaagtttccatcgatggatcacttcatgattgggacccttcttccttgaatgcag 882
           |||| ||||||||||||||||||||| |  |||||||| || ||||||| ||||  ||||
Sbjct: 886 ttttcaaagtttccatcgatggatcattcaatgattggtactcttcttctttgatagcag 945

                       
Query: 883 tgaagttgagcc 894
           ||| ||||||||
Sbjct: 946 tgaggttgagcc 957


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6061
Number of Sequences: 1807
Number of extensions: 6061
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)