BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE08FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1451 0.0
>3x_Contig1698
Length = 21001
Score = 1451 bits (732), Expect = 0.0
Identities = 769/779 (98%), Gaps = 2/779 (0%)
Strand = Plus / Minus
Query: 86 tcaatctacaacactgaacgatacaagtttgacagttgcaattcgttagtaggtcttatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 tcaatctacaacactgaacgatacaagtttgacagttgcaattcgttagtaggtcttatt 6989
Query: 146 cattttcctgttaactgttatttaattattattatttaatattgcatttcatattgctcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988 cattttcctgttaactgttatttaattattattatttaatattgcatttcatattgctcc 6929
Query: 206 ttttatttgggctttacggtatctcttttaacattttacaaccacaacttcacccttttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6928 ttttatttgggctttacggtatctcttttaacattttacaaccacaacttcacccttttc 6869
Query: 266 cagattataatcatgtctctagctaaatccgccgctaacaaattagactgggctaaggtc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6868 cagattataatcatgtctctagctaaatccgccgctaacaaattagactgggctaaggtc 6809
Query: 326 atttcttctttgaaattgactggtaagactgccacccaattgtcctctttcaagaagaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6808 atttcttctttgaaattgactggtaagactgccacccaattgtcctctttcaagaagaga 6749
Query: 386 aacgatgaagcccgtagacagttattggaattgcaaagtcaacctacgtctgttgatttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6748 aacgatgaagcccgtagacagttattggaattgcaaagtcaacctacgtctgttgatttc 6689
Query: 446 tcccattacagatctgtcttgaagaacaccgaagtcgtcgataagattgaacaattctac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6688 tcccattacagatctgtcttgaagaacaccgaagtcgtcgataagattgaacaattctac 6629
Query: 506 aaatcttacaagccagtctccgttgatgtctccaagcaactgtctaccattgaagccttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6628 aaatcttacaagccagtctccgttgatgtctccaagcaactgtctaccattgaagccttt 6569
Query: 566 gaatctcaagccattgaaaatgctgctgagactgaaaagttggtcgctcaagaattgaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6568 gaatctcaagccattgaaaatgctgctgagactgaaaagttggtcgctcaagaattgaag 6509
Query: 626 gacttgaaggaaactttgaacaacatcgaatccgctagaccattcgaccaattgactgtg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6508 gacttgaaggaaactttgaacaacatcgaatccgctagaccattcgaccaattgactgtg 6449
Query: 686 gacgaattgaccaaggctagacctgaaatcgatgccaangtggaagagatggttaagaag 745
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6448 gacgaattgaccaaggctagacctgaaatcgatgccaaggtggaagagatggttaagaag 6389
Query: 746 ggtagatgggacgttccaggttaccaggagaaattcggttgatttgactattatgtgata 805
|||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 6388 ggtagatgggacgttccaggttacaaggagaagttcgg-tgatttgactattatgtgata 6330
Query: 806 aggcgatgac-caaaatttttcctgtgcccactcatatttcatattctttcgaatacct 863
|||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct: 6329 aggcgatgacaaaaaattttccctgtgccacctcatatttcatattctttcgtatacct 6271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7736
Number of Sequences: 1807
Number of extensions: 7736
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)