BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE08RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1362 1538 0.0
>3x_Contig1362
Length = 8864
Score = 1538 bits (776), Expect = 0.0
Identities = 845/860 (98%), Gaps = 6/860 (0%)
Strand = Plus / Plus
Query: 52 cgcttctgatacaaacttggtaaagttttggaattggggttggtttggaaggatcgatta 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cgcttctgatacaaacttggtaaagttttggaattggggttggtttggaaggatcgatta 640
Query: 112 agttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgattttaagt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgattttaagt 700
Query: 172 caactctgttactattcaatagagattggaaatattgcttttcgaaatctacagtattgc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 caactctgttactattcaatagagattggaaatattgcttttcgaaatctacagtattgc 760
Query: 232 tcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttcattgctt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttcattgctt 820
Query: 292 ccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagttattttcct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagttattttcct 880
Query: 352 ctgcttttttgaactttgaggacattttgtctacccatggatctctcattggtgcgcaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ctgcttttttgaactttgaggacattttgtctacccatggatctctcattggtgcgcaat 940
Query: 412 ggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgatcccttta 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgatcccttta 1000
Query: 472 agagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatacttcttttt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 agagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatacttcttttt 1060
Query: 532 gaggaactattgttacaagaacatctttcaaagtattgaatagaggtactagtctagatc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 gaggaactattgttacaagaacatctttcaaagtattgaatagaggtactagtctagatc 1120
Query: 592 tgttttcgtcgaaaacatcaggcctttggttgtaaacataaatttcattctcaacatcac 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 tgttttcgtcgaaaacatcaggcctttggttgtaaacataaatttcattctcaacatcac 1180
Query: 652 tccagtacttatcggcaatttgtctcttcttgatccctctttcaccatccaaattttggc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1181 tccagtacttatcggcaatttgtctcttcttgatccctctttcaccatccaaa-tttggc 1239
Query: 712 ctaaattgtaacatatgatcgaacactttgtcgtgtctgagttgaggattcttcacaatc 771
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1240 ctaaattgtaacataggatcgaacactatgtcgtgtctgagttgaggattcttcacaatc 1299
Query: 772 tcag-caaatcgatctctttc-agcattgcaaattaattgggggtaaa-gcattggagtt 828
|||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct: 1300 tcagacaaatcgatctctttcaagcattgcaaattaattgggggtaaaggaattggagtt 1359
Query: 829 gcgtatgttttgatgtatttgattctttcttcaggagggaatatctcta-tgtccattgt 887
| ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 1360 gggtatgttttgatgtatttgattctttcttcaagaggg-atatccttactgtccattgt 1418
Query: 888 ttggagacaatgtgtcatta 907
||| |||| |||||||||||
Sbjct: 1419 ttgtagacgatgtgtcatta 1438
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7646
Number of Sequences: 1807
Number of extensions: 7646
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)