BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE09FM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1515 0.0
>3x_Contig1686
Length = 15382
Score = 1515 bits (764), Expect = 0.0
Identities = 786/792 (99%), Gaps = 1/792 (0%)
Strand = Plus / Minus
Query: 86 ttccagcttgagcctctgtagctcttgccaacgggtcaactgtgcttgtttgtgtaaatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11002 ttccagcttgagcctctgtagctcttgccaacgggtcaactgtgcttgtttgtgtaaatc 10943
Query: 146 gaacccaaacacttttggaacgtatcttttcgttgggtgtttcggacacatctcggggaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10942 gaacccaaacacttttggaacgtatcttttcgttgggtgtttcggacacatctcggggaa 10883
Query: 206 tccttgcaagaacattccgggaaagctggtaccgaaatacgctccgtcaatggcactatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10882 tccttgcaagaacattccgggaaagctggtaccgaaatacgctccgtcaatggcactatg 10823
Query: 266 tctgcttgactttggattgtaaagatcttcacaacttggacaatatagtttcacacagtc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10822 tctgcttgactttggattgtaaagatcttcacaacttggacaatatagtttcacacagtc 10763
Query: 326 aatgcccggtatgtcatgtagtccaacaggaagtagcggttgatggttacaatgatacct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10762 aatgcccggtatgtcatgtagtccaacaggaagtagcggttgatggttacaatgatacct 10703
Query: 386 ggggcaccttccaaaatcggccgctttgtatttctgtagcatcttctgtaaacctttcgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10702 ggggcaccttccaaaatcggccgctttgtatttctgtagcatcttctgtaaacctttcgc 10643
Query: 446 cgtgataatgtaacgtgcatggatcaatccgtacagcttccttgtatccgtttccaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10642 cgtgataatgtaacgtgcatggatcaatccgtacagcttccttgtatccgtttccaattg 10583
Query: 506 ttctaaacgtgctggtgacatgctctcgatgatgccttcttcaagatcatccaccatata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10582 ttctaaacgtgctggtgacatgctctcgatgatgccttcttcaagatcatccaccatata 10523
Query: 566 ttgtaccacagtggtaaacttagatactgtcttttgtaaattgattagattgaacctatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10522 ttgtaccacagtggtaaacttagatactgtcttttgtaaattgattagattgaacctatc 10463
Query: 626 cgtgatgtattccgtatcaatgtcacagaaatattcatggccttttttcccaagaaacaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462 cgtgatgtattccgtatcaatgtcacagaaatattcatggccttttttcccaagaaacaa 10403
Query: 686 atcaatccaatattccacgtactcgcccgaatccgatccatcatcttgatcatttactac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10402 atcaatccaatattccacgtactcgcccgaatccgatccatcatcttgatcatttactac 10343
Query: 746 tagagcatcagccataactacgtccggttgttcagtggttctcacactctctttaggaat 805
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 10342 tagagcatcagccataactacgtccggttgttcagtggtctccacactctcttcaggaat 10283
Query: 806 tgacatctcctattgaacctgatgattctagat-tcgaatttaaacctcctaggaaaaaa 864
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10282 tgacatctcctattgaacctgatgattctagatatcgaatttaaacctcctaggaaaaaa 10223
Query: 865 aaaaggaggctc 876
|||| |||||||
Sbjct: 10222 aaaatgaggctc 10211
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6530
Number of Sequences: 1807
Number of extensions: 6530
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)