BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE09RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1465 0.0
>3x_Contig1340
Length = 7156
Score = 1465 bits (739), Expect = 0.0
Identities = 871/901 (96%), Gaps = 14/901 (1%)
Strand = Plus / Plus
Query: 48 taaagatcccattgaaaaaaagg-cagaaattaaaatatccgggtaacgaaatatttatt 106
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4718 taaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatttatt 4777
Query: 107 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 4837
Query: 167 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 4897
Query: 227 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 4957
Query: 287 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 5017
Query: 347 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 5077
Query: 407 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 5137
Query: 467 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5138 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 5197
Query: 527 cttttggatgattgtttattggtccgggtaatgaaacggctntgacagcataaaagacag 586
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5198 cttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaagacag 5257
Query: 587 gacacattgaggccaaacgcaaagggtggtaaatcgttgtgcagagtgtattaatgcatc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5258 gacacattgaggccaaacgcaaagggtggtaaatcgttgtgcagagtgtattaatgcatc 5317
Query: 647 gnctcagtacaatatatcccanaaattanggaccgtcaaatcacctagctctctgtaatc 706
| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 5318 gcctcagtacaatatatcccaaaaattagggaccgtcaaatcacctagctctctgtaatc 5377
Query: 707 catgtgttagccttttctatgatttataggtgtcacccacacaccacacgtttaatattt 766
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 5378 catgtgttagccttttctatgatttatagttgtcacccacacaccacacgtttaata-tt 5436
Query: 767 caattgtaaaagaaaaaaaagttggaaaaattcttggatcaggagaatttggaaggaaat 826
||||||||||||||||||| ||| |||||||| |||||||| |||| |||||| |||||
Sbjct: 5437 caattgtaaaagaaaaaaagtttgaaaaaattc-tggatcagaagaa-ttggaaagaaat 5494
Query: 827 ccccgatgagccttaaagctgtctaaattcaattgattcaatgaagcctacatattttga 886
|| ||||||| ||||||||||||| |||||||||||||||||| || ||||||| |||||
Sbjct: 5495 ccacgatgag-cttaaagctgtct-aattcaattgattcaatg-aggctacata-tttga 5550
Query: 887 tatttcatttcatcccggttggatttttgttggcagtcagttgttggcaaatcaattttt 946
|| ||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 5551 ta-ttctattcat-ccggttg--attttgttggcagtcagt--gtggcaaatcaattttt 5604
Query: 947 a 947
|
Sbjct: 5605 a 5605
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9325
Number of Sequences: 1807
Number of extensions: 9325
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)