BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE10FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1540 1463 0.0
>3x_Contig1540
Length = 9505
Score = 1463 bits (738), Expect = 0.0
Identities = 799/810 (98%), Gaps = 7/810 (0%)
Strand = Plus / Minus
Query: 87 cataggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttctttggct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 cataggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttctttggct 5245
Query: 147 cttaatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 cttaatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagca 5185
Query: 207 agtttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 agtttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgca 5125
Query: 267 taatcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 taatcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaa 5065
Query: 327 agatctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgcacaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 agatctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgcacaa 5005
Query: 387 acatacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcattagcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 acatacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcattagcc 4945
Query: 447 gcacagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaactta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 gcacagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaactta 4885
Query: 507 ttctgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgtatta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 ttctgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgtatta 4825
Query: 567 taacttgctattggattaacctgattttaattgaagtgtaagataacaacgtttggctta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 taacttgctattggattaacctgattttaattgaagtgtaagataacaacgtttggctta 4765
Query: 627 actagtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaatagcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 actagtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaatagcc 4705
Query: 687 tccgtacttccactggtatctttgaaagtgtccgatctcactgc-tttatacacttaaac 745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4704 tccgtacttccactggtatctttgaaagtgtccgatctcactgcttttatacacttaaac 4645
Query: 746 aatgaaatacagtcataaacaagagtccatagtaaaccatttcatttc-ttaccagtctt 804
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 4644 aatgaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccagtctt 4585
Query: 805 actttc-aagtgtgtctaattttgc-ctctttcg-aatatcaacagattggttt-atgct 860
|||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct: 4584 actttcaaagtgtgtctaattttgcactctttcgaaatatcaacagattggtttcatgct 4525
Query: 861 ttaaacccat-atgactaagtcttccggtc 889
|||||||||| |||||||||||||||||||
Sbjct: 4524 ttaaacccataatgactaagtcttccggtc 4495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5346
Number of Sequences: 1807
Number of extensions: 5346
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)