BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZE10RM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1562                                                        1011   0.0  

>3x_Contig1562 
          Length = 11773

 Score = 1011 bits (510), Expect = 0.0
 Identities = 570/583 (97%), Gaps = 6/583 (1%)
 Strand = Plus / Plus

                                                                       
Query: 327 acaccagtaacatctttacctaaagacaataaaacgtaagtatcctgaacagaaattacc 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaccagtaacatctttacctaaagacaataaaacgtaagtatcctgaacagaaattacc 60

                                                                       
Query: 387 ctagcaggtagaacatcgccttctttaatttctgaaatagaggagatggcgtgcgatcta 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctagcaggtagaacatcgccttctttaatttctgaaatagaggagatggcgtgcgatcta 120

                                                                       
Query: 447 gcagaaacaactagtgaatcatgctcagtatcaatagatttgacggttactctgacagct 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagaaacaactagtgaatcatgctcagtatcaatagatttgacggttactctgacagct 180

                                                                       
Query: 507 gtacctattgggtatttctcttcaattggtaaggaaaagtcatgaccttcatctgagatc 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtacctattgggtatttctcttcaattggtaaggaaaagtcatgaccttcatctgagatc 240

                                                                       
Query: 567 tcaaagattggtagtttggccttgacagtaggagtgatagtcaaccatgcggtatcgttg 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaagattggtagtttggccttgacagtaggagtgatagtcaaccatgcggtatcgttg 300

                                                                       
Query: 627 ctataattattaatgaatccaaaggttgtttgctctggagtgaagtccttgagtttcttt 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctataattattaatgaatccaaaggttgtttgctctggagtgaagtccttgagtttcttt 360

                                                                       
Query: 687 tcggaaactggagaagttaatgaagatggctttgcgctcagttcgactagatggctcttg 746
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcggaaactggagaagttaatgaagatggctttgcgctcagttcgactagatggctcttg 420

                                                                       
Query: 747 gatgttgtgtgagaaattggtaagaaattacggcttttaatatcgtgggacccgattact 806
           |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 421 gatgttgtgtgagaaattggtaagaatttacggcttttaatatcgtggaacccgataact 480

                                                                       
Query: 807 ctgactgagagtgaatcattttttcttgtacacacttnaatggngcccttntgnntcttt 866
           |||||||||||||||||| |||||||||||||||||| ||||| | |||| ||  |||||
Sbjct: 481 ctgactgagagtgaatca-tttttcttgtacacactt-aatggtg-ccttttg-ttcttt 536

                                                      
Query: 867 gataatcttcgaaactgtcgaaaactttcaaaaatactgatac 909
           ||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct: 537 gat-atcttcgaaactgtcgaaaac-ttcagaaatactgatac 577


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7435
Number of Sequences: 1807
Number of extensions: 7435
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)