BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1288 1584 0.0
>3x_Contig1288
Length = 8015
Score = 1584 bits (799), Expect = 0.0
Identities = 870/883 (98%), Gaps = 8/883 (0%)
Strand = Plus / Minus
Query: 48 tagctttagatttcgcaacagcgaagagctcggcagcattttcgaagtcactttcatcct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 tagctttagatttcgcaacagcgaagagctcggcagcattttcgaagtcactttcatcct 2361
Query: 108 cgctactgctatcctctttcttcggttgcaatgttggtcttgtattgaaaacttgacttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 cgctactgctatcctctttcttcggttgcaatgttggtcttgtattgaaaacttgacttt 2301
Query: 168 gagcaggatgaattacacgcttttcaataagctttttcctttccagttcaaatctagata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 gagcaggatgaattacacgcttttcaataagctttttcctttccagttcaaatctagata 2241
Query: 228 agggcttgggagcaggcgcactaacagttggcgtaccacctggtttgaagaaaccatatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 agggcttgggagcaggcgcactaacagttggcgtaccacctggtttgaagaaaccatatg 2181
Query: 288 atgaaagggttgactgacccttaggacgagaaagaagcgatgaacctatatttgcctttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 atgaaagggttgactgacccttaggacgagaaagaagcgatgaacctatatttgcctttt 2121
Query: 348 tcaacattgaatcagcacgctggccagaagtcatggatggtttattcggttgctgctgaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 tcaacattgaatcagcacgctggccagaagtcatggatggtttattcggttgctgctgaa 2061
Query: 408 cagtagagatggtagcttttgattcctgtaaggatccagaaggtttagtaccctttttca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 cagtagagatggtagcttttgattcctgtaaggatccagaaggtttagtaccctttttca 2001
Query: 468 gtaatgctttttctaagtgatacttttcagattctttaacaacttcgtttgtcaaggctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 gtaatgctttttctaagtgatacttttcagattctttaacaacttcgtttgtcaaggctt 1941
Query: 528 tgttgaagtaacgggatctttcaagaagctcttggctctgagccgctgaaagtttgtttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 tgttgaagtaacgggatctttcaagaagctcttggctctgagccgctgaaagtttgtttg 1881
Query: 588 gatattttcgagcttttgaagcatatcttgccatatccaacactagcatttcatcaaatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 gatattttcgagcttttgaagcatatcttgccatatccaacactagcatttcatcaaatc 1821
Query: 648 gaaattgtttctccttcgcaagatcagaagctgatactattaacatgacacaagaagcaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1820 gaaattgtttctccttcgcaagatcagaagctgatactattaacatgacacaagaggcaa 1761
Query: 708 gaagctgttcatcattcaacctcanaccagt-aagcatatttttgaatgggctcattggg 766
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 1760 gaagctgttcatcattcaacctca-accagtaaagcatatttttgaatgggctcattggg 1702
Query: 767 aatttgaaaagatcatcttcagttatatttcccttgactaaaacatcggagaactcccta 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 aatttgaaaagatcatcttcagttatatttcccttgactaaaacatcggagaactcccta 1642
Query: 827 t-agaaaccattagcatattgctaac-ctcta-cacatctcttgtgaaattctcc-atac 882
| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct: 1641 taagaacccattagcatattgctaacactctagcacatctcttgtgaaattctccaatac 1582
Query: 883 cacattttgatacccttga-gtccattggatggtttctagata 924
||||||| ||| |||||| |||||||| ||||||||||||||
Sbjct: 1581 cacatttgaata-ccttgaggtccattgaatggtttctagata 1540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7210
Number of Sequences: 1807
Number of extensions: 7210
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)