BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE12FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1631 1499 0.0
>3x_Contig1631
Length = 12284
Score = 1499 bits (756), Expect = 0.0
Identities = 793/802 (98%), Gaps = 3/802 (0%)
Strand = Plus / Minus
Query: 88 atctattccgttcaataagtagaaatgtctatgcagtataagaagactcatatgctaatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5283 atctattccgttcaataagtagaaatgtctatgcagtataagaagactcatatgctaatt 5224
Query: 148 cataaaaatcagtatagagggctaaacatgtacatatatctgataattggccttgggaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5223 cataaaaatcagtatagagggctaaacatgtacatatatctgataattggccttgggaaa 5164
Query: 208 ttaaacccacgaatcataattcaagcgaaccatttgtgtatggtttgcatgatttccggt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5163 ttaaacccacgaatcataattcaagcgaaccatttgtgtatggtttgcatgatttccggt 5104
Query: 268 gggtatcgttgaagtagagcagatgcttgttcctgtgggatagtacttagtagttttttt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5103 gggtatcgttgaagtagagcagatgcttgttcctgtgggatagtacttagtagttttttt 5044
Query: 328 gcagattctaccacagcagtagcattttttccaccgatagacttttgatgtaaggcttgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5043 gcagattctaccacagcagtagcattttttccaccgatagacttttgatgtaaggcttgt 4984
Query: 388 atcacataatcaacgatttcggctgtgttaccttgaatcacaggcgaattgtggtctatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4983 atcacataatcaacgatttcggctgtgttaccttgaatcacaggcgaattgtggtctatc 4924
Query: 448 aattgtgccaacattctataattgaacgcggcacattcttcatcgtggataacggggaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4923 aattgtgccaacattctataattgaacgcggcacattcttcatcgtggataacggggaaa 4864
Query: 508 gtcttcaaccagttggcagtatactgttcaaagtttggaatgctggagccgtaactgctc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4863 gtcttcaaccagttggcagtatactgttcaaagtttggaatgctggagccgtaactgctc 4804
Query: 568 aagatctttgcaatggcgcaagatgcattttccgaggaattaacgttatcttcagatctg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4803 aagatctttgcaatggcgcaagatgcattttccgaggaattaacgttatcttcagatctg 4744
Query: 628 gattctggcatgttgacgatttggaataaagtttccaacgatcccaaacatatgtcagag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4743 gattctggcatgttgacgatttggaataaagtttccaacgatcccaaacatatgtcagag 4684
Query: 688 taggtgttgggggcatattgtgcacatactccgagtaggtatgcagtaccctggcgaatg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4683 taggtgttgggggcatattgtgcacatactccgagtaggtatgcagtaccctggcgaatg 4624
Query: 748 ganggttcagggaatgtgaggcactccttaattttctggacgaaatgctggttgaaaggt 807
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 4623 gagggttcagggaatgtgaggcactccttaattttctgaacgaaatgctgtttgaaaggt 4564
Query: 808 gcanagttatcgccagtggatttctatcatatcagcatttgcaatcaaggcgaaccaata 867
||| |||||||||||||| | |||||||||||||||| |||||||||||||||| |||||
Sbjct: 4563 gcagagttatcgccagtgta-ttctatcatatcagcaattgcaatcaaggcgaa-caata 4506
Query: 868 aaatgaataccttcagtctcct 889
||||||||||| ||||||||||
Sbjct: 4505 aaatgaatacc-tcagtctcct 4485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4930
Number of Sequences: 1807
Number of extensions: 4930
Number of successful extensions: 18
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)