BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZE12RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1049 1520 0.0
>3x_Contig1049
Length = 4107
Score = 1520 bits (767), Expect = 0.0
Identities = 837/851 (98%), Gaps = 7/851 (0%)
Strand = Plus / Minus
Query: 48 actgatatgtactctttgaatattgagttctggaaaacagcaaataacgtggtcttggct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2927 actgatatgtactctttgaatattgagttctggaaaacagcaaataacgtggtcttggct 2868
Query: 108 agcgtcctggtaacgttatacggtattttaaggaaatctagcgtgtcagtaatgattagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2867 agcgtcctggtaacgttatacggtattttaaggaaatctagcgtgtcagtaatgattagc 2808
Query: 168 ttcctagtaacgataatgttctcgcagatatcaagtttccaagatttaatttatacgctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2807 ttcctagtaacgataatgttctcgcagatatcaagtttccaagatttaatttatacgctc 2748
Query: 228 aactttgactcttatcatttgctagccttaacgttgctaatcttacattggaggaaattt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2747 aactttgactcttatcatttgctagccttaacgttgctaatcttacattggaggaaattt 2688
Query: 288 caggcctccaaagacttttccgtcgattggtacatgaatataacacttgtttcgatgtca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 caggcctccaaagacttttccgtcgattggtacatgaatataacacttgtttcgatgtca 2628
Query: 348 ttgattttcgttataagtgggaaattcatagggttggtctcttggatatggctcattata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2627 ttgattttcgttataagtgggaaattcatagggttggtctcttggatatggctcattata 2568
Query: 408 gtttctttgaaatcactttggattgttgtgggtgatttggatgttaaaaacagacaactt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2567 gtttctttgaaatcactttggattgttgtgggtgatttggatgttaaaaacagacaactt 2508
Query: 468 tttgccattatgttttgtaggttattgttcttcgtcgttattcccttgatgtctttatgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507 tttgccattatgttttgtaggttattgttcttcgtcgttattcccttgatgtctttatgg 2448
Query: 528 tactcttactcatcattaattggtggtttcacaacatcgtcaaactcaatagcgtacatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 tactcttactcatcattaattggtggtttcacaacatcgtcaaactcaatagcgtacatg 2388
Query: 588 tcgtcatctttccagcattattcgatgagccagcacaatgatattccatcttccatcatt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 tcgtcatctttccagcattattcgatgagccagcacaatgatattccatcttccatcatt 2328
Query: 648 tacggcagttcaattaggcttcgccatgttaattctttgggcggatatctatcagcctta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 tacggcagttcaattaggcttcgccatgttaattctttgggcggatatctatcagcctta 2268
Query: 708 gaaataccataccctaaatctaacgacacattggtaacagttttctgacgatccagatga 767
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2267 gaaataccataccctaaatctaacgacacattggtaacag-tttctgacgatccagatga 2209
Query: 768 tgaggctaacttttggatcattgaatctaataaa-gaagatacactgaacagacacgttc 826
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 2208 tgaggctaacttttggatcattgaatctaataaaggaagaaacactgaacagacaggtt- 2150
Query: 827 cgaccgcattatttaaaacaaccggacaaggtggaagttgaagaaccaagaataacaggt 886
||| ||||||| |||||||| |||||||||| ||||||| |||| |||||| |||||||
Sbjct: 2149 cgaacgcatta-gtaaaacaaacggacaaggt-gaagttg-agaaacaagaa-aacaggt 2094
Query: 887 caattactgag 897
|||||| ||||
Sbjct: 2093 caattattgag 2083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7215
Number of Sequences: 1807
Number of extensions: 7215
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)