BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF01RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1643 0.0
>3x_Contig1763
Length = 22654
Score = 1643 bits (829), Expect = 0.0
Identities = 865/872 (99%), Gaps = 4/872 (0%)
Strand = Plus / Minus
Query: 47 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 10916
Query: 107 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10915 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 10856
Query: 167 cgtctcttttcggtattatgctatttccttttatttctccgttttgattggttttttttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 cgtctcttttcggtattatgctatttccttttatttctccgttttgattggttttttttt 10796
Query: 227 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10795 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 10736
Query: 287 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10735 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 10676
Query: 347 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10675 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 10616
Query: 407 cctaatcttttctcattttctgattctctcattttcactcagaaaaagaacaaatgaaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10615 cctaatcttttctcattttctgattctctcattttcactcagaaaaagaacaaatgaaaa 10556
Query: 467 taccgacagcacgcagcaccggttcctggcagtgtggtacaagaacctgcagttttcgaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 taccgacagcacgcagcaccggttcctggcagtgtggtacaagaacctgcagttttcgaa 10496
Query: 527 ttgtttttctgtgatcctttggttacccggggttgtgtttcgtacatgatgatacggtga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10495 ttgtttttctgtgatcctttggttacccggggttgtgtttcgtacatgatgatacggtga 10436
Query: 587 tcccggatctggaaataaaaaggggttcttgcccagttctagtcatgtgactgcgaatcg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10435 tcccggatctggaaataaaaaggggttcttgcccagttctagtcatgtgactgcgaatcg 10376
Query: 647 cagagatctgatagaaagaagaaaaaaaagagatcatttctatatcacgtgattgatgtt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10375 cagagatctgatagaaagaagaaaaaaaagagatcatttctatatcacgtgattgatgtt 10316
Query: 707 tcaattccatcatgggttcaagtatcgttattgtcatcatcatagaagtcataaatagag 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10315 tcaattccatcatgggttcaagtatcgttattgtcatcatcatagaagtcataaatagag 10256
Query: 767 catatatactgtttaggcgaacggaggttaag-ttatttactcgctctcatacgatctag 825
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10255 catatatactgtttaggcgaacggaggttaagtttatttactcgctctcatacgatctag 10196
Query: 826 ctctttgtcaacacgagcttgtagattctt-tttagtncaggcatgaaccctaaaataaa 884
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 10195 ctctttgtcaacacgagcttgtagattcttcttaagttcaggcatgaaccctaaaataaa 10136
Query: 885 -agtaattcctaaaggatgaa-tatggcgcta 914
|||||||| ||||||||||| ||||||||||
Sbjct: 10135 tagtaattcgtaaaggatgaagtatggcgcta 10104
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,930
Number of Sequences: 1807
Number of extensions: 14930
Number of successful extensions: 242
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)