BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF02RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1675 0.0
>3x_Contig1690
Length = 13018
Score = 1675 bits (845), Expect = 0.0
Identities = 880/889 (98%), Gaps = 2/889 (0%)
Strand = Plus / Plus
Query: 47 agtttctttagcatgagatttcggacagaaagtgcggaaaataaagtgacgcagcatttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3041 agtttctttagcatgagatttcggacagaaagtgcggaaaataaagtgacgcagcatttt 3100
Query: 107 ttaagtggtgtaggctctcaatgttcgagttgtttgcttaaacggtccggaaacaatgtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3101 ttaagtggtgtaggctctcaatgttcgagttgtttgcttaaacggtccggaaacaatgtt 3160
Query: 167 gtgtgtattgatggataatccgtttttatttcctaggatgaatgttcaagcattgtgcta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3161 gtgtgtattgatggataatccgtttttatttcctaggatgaatgttcaagcattgtgcta 3220
Query: 227 attatttttggtgacaaacttgatctgatctttaaagactttgaatcgggaaaatacatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3221 attatttttggtgacaaacttgatctgatctttaaagactttgaatcgggaaaatacatg 3280
Query: 287 ttcctccattaatcaataagagatctagatacggatttgaaatctttaattagaacttag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 ttcctccattaatcaataagagatctagatacggatttgaaatctttaattagaacttag 3340
Query: 347 aactctactattccatatttagacgtttcattagccatttccgagagtggccatttagag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3341 aactctactattccatatttagacgtttcattagccatttccgagagtggccatttagag 3400
Query: 407 catagcactttctgattctcatcagtcctaatccaaagaaatattctctattcacaactt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3401 catagcactttctgattctcatcagtcctaatccaaagaaatattctctattcacaactt 3460
Query: 467 gaaaaggggaagttacttgagcctgtttcaagaaaggaataagagctgaattttcaagcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3461 gaaaaggggaagttacttgagcctgtttcaagaaaggaataagagctgaattttcaagcc 3520
Query: 527 atgtcaagttactctagtgaaaataatgatactcggcgtgttatcgatttgagttctaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3521 atgtcaagttactctagtgaaaataatgatactcggcgtgttatcgatttgagttctaat 3580
Query: 587 aacatcgggagtcgattacatgagtctcttgtcgattcaaacagagctatatatacaagt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3581 aacatcgggagtcgattacatgagtctcttgtcgattcaaacagagctatatatacaagt 3640
Query: 647 gggatgcaagaacgttctttgaatgaacaaaatattcacttggtcaatacgttggaagaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3641 gggatgcaagaacgttctttgaatgaacaaaatattcacttggtcaatacgttggaagaa 3700
Query: 707 agaagtcccaatgataaattactgctgagtccatacgaagaagaactttacagacgtagt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 agaagtcccaatgataaattactgctgagtccatacgaagaagaactttacagacgtagt 3760
Query: 767 cttagactgagtcccgttacttcaatcgcagcacccatacccacagttacattgcttggg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 cttagactgagtcccgttacttcaatcgcagcacccatacccacagttacattgcttggg 3820
Query: 827 gaggatgcaccaccagaagccggaaagactgctttaccgtatatgaccgattttgacagt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 gaggatgcaccaccagaagccggaaagactgctttaccgtatatgaccgattttgacaag 3880
Query: 887 ttcca-gtggaacatgaaaaggacatttag-ataagcgacaaggtttgg 933
||||| |||||||| |||||| ||| | || ||| ||||||||||||||
Sbjct: 3881 ttccaggtggaacaggaaaagaacaataagaataggcgacaaggtttgg 3929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6899
Number of Sequences: 1807
Number of extensions: 6899
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)