BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC48ZF03FM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1523 1443 0.0 >3x_Contig1523 Length = 10049 Score = 1443 bits (728), Expect = 0.0 Identities = 838/860 (97%), Gaps = 11/860 (1%) Strand = Plus / Minus Query: 86 aagaaagataagcatgaggtccggaaacaaagtcacgtgaacgttttttttcagttatag 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3036 aagaaagataagcatgaggtccggaaacaaagtcacgtgaacgttttttttcagttatag 2977 Query: 146 catacctttcttatgcatgcgtcacaaaatgatgacacgagctcttggttttgccttaaa 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2976 catacctttcttatgcatgcgtcacaaaatgatgacacgagctcttggttttgccttaaa 2917 Query: 206 agcatgacgcagccaaggcattgtaaatattctccctgagtatcatcgttgttgaataaa 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2916 agcatgacgcagccaaggcattgtaaatattctccctgagtatcatcgttgttgaataaa 2857 Query: 266 tgatgaccgttatttagcattccgttatattcatctttcgtatagttcaatttaaaggtg 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2856 tgatgaccgttatttagcattccgttatattcatctttcgtatagttcaatttaaaggtg 2797 Query: 326 gaagtattcgactgaaatgtaattggtatgttcccatggtatattagaataggtggtaag 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 gaagtattcgactgaaatgtaattggtatgttcccatggtatattagaataggtggtaag 2737 Query: 386 ctggcactactagtttctttagtaattaatgtatccgttaacctctttgtattgtagctt 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 ctggcactactagtttctttagtaattaatgtatccgttaacctctttgtattgtagctt 2677 Query: 446 tgtaaatgacaaccaaacgcaatcggcgtcgataaactaaagtttgccgccagcagttcc 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 tgtaaatgacaaccaaacgcaatcggcgtcgataaactaaagtttgccgccagcagttcc 2617 Query: 506 tctgaggttgggatataaggcatgagatccatttcccaaatctcattcttaagtgcgaca 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2616 tctgaggttgggatataaggcatgagatccatttcccaaatctcattcttaagtgcgaca 2557 Query: 566 atccttttttgttcttccacatggattatatcatcgtatgtatctcgaagctttgtcata 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2556 atccttttttgttcttccacatggattatatcatcgtatgtatctcgaagctttgtcata 2497 Query: 626 tcaggtaggttctctttgtctgaacttgaatcaacaataaatataacatcatttctgtct 685 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2496 tcaggtaggttctctttgtctgaacttgaatcaacaataaatataacatca-ttctgtct 2438 Query: 686 tccgctgataaataaagatctgagcggtatattttcaccatcttctccaccatttactag 745 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2437 tccgctgataaataaagatctgagcggtatattttcaccatcttctccaccatctactag 2378 Query: 746 aaatagctgagatgtgtcacttatcaaattcagaacttttggatctttataaaaagggtt 805 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2377 aaatagctgagatgtgtcacttatcaaattcagaacttctggatctttataaaaagggtt 2318 Query: 806 tgggtgggtatattgccgtaattagaatcgaatgggcattaaatcccacacccaaattca 865 | ||| ||||||||| |||||| || ||||||| |||||||||||| ||| |||||| || Sbjct: 2317 t-ggttggtatattg-cgtaatcag-atcgaat-ggcattaaatccaaca-ccaaataca 2263 Query: 866 ccaaagattggtttttattggcttttaacttttcgttgggattctaggtttggttggtac 925 ||||||| ||||||||||| || |||||||| ||||| |||||||| |||| |||| ||| Sbjct: 2262 ccaaaga-tggtttttatt-gcctttaacttctcgtt-ggattctatgttt-gttgttac 2207 Query: 926 cggttttccaaatttagaac 945 | ||||||||||| |||||| Sbjct: 2206 c-gttttccaaatatagaac 2188 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7029 Number of Sequences: 1807 Number of extensions: 7029 Number of successful extensions: 34 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)