BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1436 1659 0.0
>3x_Contig1436
Length = 9951
Score = 1659 bits (837), Expect = 0.0
Identities = 889/900 (98%), Gaps = 5/900 (0%)
Strand = Plus / Plus
Query: 46 cagtccagatggtactttaacctccttaccagcatcttcgccccataaat-aagggatcc 104
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5350 cagtccagatggtactttaacctccttaccagcatcttcgccccataaatcaagggatcc 5409
Query: 105 tgactt-acaagaccttcttttgcaactcttgctttcaacttactttcaccaattttttt 163
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5410 tgacttcacaagaccttcttttgcaactcttgctttcaacttactttcaccaattttttt 5469
Query: 164 accagctaaagcaagtaatctgtccagttctttctttgataccccttggatcttatcatg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5470 accagctaaagcaagtaatctgtccagttctttctttgataccccttggatcttatcatg 5529
Query: 224 tttcttgttaacagtctttgggttggttagagcaggcactttggatttagacttgataga 283
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5530 tttcttgttagcagtctttgggttggttagagcaggcactttggatttagacttgataga 5589
Query: 284 ctccaaaatctcggttgacttcagagttttcttgattgctttcctcttcactaatttctg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590 ctccaaaatctcggttgacttcagagttttcttgattgctttcctcttcactaatttctg 5649
Query: 344 ctttaaaacttggtcaccctcagtatcaaccgcaaaaagcgcatcatcgctaagttctgt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5650 ctttaaaacttggtcaccctcagtatcaaccgcaaaaagcgcatcatcgctaagttctgt 5709
Query: 404 caaattctgcttaccatgagtagtctcaaggatctgcttctcttcgagcttgcgttccac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5710 caaattctgcttaccatgagtagtctcaaggatctgcttctcttcgagcttgcgttccac 5769
Query: 464 atcgcttatatcaatattctttctccatgccttcttacctttacgagaagattgtttgta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5770 atcgcttatatcaatattctttctccatgccttcttacctttacgagaagattgtttgta 5829
Query: 524 ctgagctggtctgtccttagatcccgccataactaactattttgtctgtttgtttgaggt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5830 ctgagctggtctgtccttagatcccgccataactaactattttgtctgtttgtttgaggt 5889
Query: 584 ggattgtcctgaatagtatggtaaggattagtaaaacgatacgccagtccccgagtatta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5890 ggattgtcctgaatagtatggtaaggattagtaaaacgatacgccagtccccgagtatta 5949
Query: 644 attgtgtacttgaattcatctcatcgcatcgcatctcatctctttttttttttttcatct 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5950 attgtgtacttgaattcatctcatcgcatcgcatctcatctctttttttttttttcatct 6009
Query: 704 tattggcatcggattgtctaaatgaaaaattgacataaaaaaaaagaaatatgattattc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6010 tattggcatcggattgtctaaatgaaaaattgacataaaaaaaaagaaatatgattattc 6069
Query: 764 tccgggtaacattcactttcgaagcanagtaaaggatatcgattcataatagacaaggag 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6070 tccgggtaacattcactttcgaagcaaagtaaaggatatcgattcataatagacaaggag 6129
Query: 824 atagctgtcgaatgtcaattaggagaggaatagtctagaatcgggtgatattgat-agta 882
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 6130 atagctgtcgaatgtcaattaggagaggaatagtctagaatcgtgtgatattgataagta 6189
Query: 883 acatctgtaattgataaaat-aatgattcttcaatcagaatatatggctatatatttgaa 941
|||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||
Sbjct: 6190 acatctgtaattgataaaataaatgattcttcaatcgaattatat-gctatatatttgaa 6248
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,138
Number of Sequences: 1807
Number of extensions: 16138
Number of successful extensions: 354
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)