BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1456 1378 0.0
3x_Contig1514 163 8e-40
>3x_Contig1456
Length = 10138
Score = 1378 bits (695), Expect = 0.0
Identities = 732/739 (99%), Gaps = 4/739 (0%)
Strand = Plus / Minus
Query: 186 tcatactta-atatcccaaccggtgtgtctactctagtaaagctattggacgatattaat 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10116 tcatacttatatatcccaaccggtgtgtctactctagtaaagctattggacgatattaat 10057
Query: 245 gaaccgatccgtgacgagactatattgttacttatggctgtcgttaatgataattcgcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10056 gaaccgatccgtgacgagactatattgttacttatggctgtcgttaatgataattcgcat 9997
Query: 305 ttccagaagttagtcgcatttgagaacgttttcgaaaaattgttctccattatagatgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9996 ttccagaagttagtcgcatttgagaacgttttcgaaaaattgttctccattatagatgat 9937
Query: 365 gaaggtggattgagaggatccttagtagttaacgattgtctttcattgatcaataatatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9936 gaaggtggattgagaggatccttagtagttaacgattgtctttcattgatcaataatatc 9877
Query: 425 ttgaaatataacacatcaaatcagactcttttttttgaaaccggcaacttacatcattta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9876 ttgaaatataacacatcaaatcagactcttttttttgaaaccggcaacttacatcattta 9817
Query: 485 atcaatttattgaatgagcctttatccgttgaagaggaattcttttggaatgaacagcgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9816 atcaatttattgaatgagcctttatccgttgaagaggaattcttttggaatgaacagcgt 9757
Query: 545 atgaagaatatcaacacggttttagatatcattcgactaacagttgaagatggaaatagt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9756 atgaagaatatcaacacggttttagatatcattcgactaacagttgaagatggaaatagt 9697
Query: 605 gtaacatcggcccatcagaatattctgtatgaatcgcaagttttgatggtggtgttgaga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9696 gtaacatcggcccatcagaatattctgtatgaatcgcaagttttgatggtggtgttgaga 9637
Query: 665 ttggcgttcttcatttatacgccaaactctataaagcttatttcattgctaactgttgct 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9636 ttggcgttcttcatttatacgccaaactctataaagcttatttcattgctaactgttgct 9577
Query: 725 gatatgatcaaaaacaatgccactgttcagcaaaaattctctcagatagatgtgccatac 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9576 gatatgatcaaaaacaatgccactgttcagcaaaaattctctcagatagatgtgccatac 9517
Query: 785 tgggatccaagtgttccatcatattcatcaatgggtgaaccg-aaatagtgccagtacta 843
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9516 tgggatccaagtgttccatcatattcatcaatgggtgaaccgaaaatagtgccagtacta 9457
Query: 844 acgttgcttttgtcttggacc-tacttatgaactcag-tcatatatttgacattcgggtg 901
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||
Sbjct: 9456 acgttgcttttgtcttggaccttacttatgaactcagttcatatatttgacattcgtgtg 9397
Query: 902 gcatcgtttggagtactaa 920
|||||||| | ||||||||
Sbjct: 9396 gcatcgttagaagtactaa 9378
>3x_Contig1514
Length = 10546
Score = 163 bits (82), Expect = 8e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 86 ttattcactttcttggacacatcggcgtttcatatcaagttatacacaattcaactgttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 ttattcactttcttggacacatcggcgtttcatatcaagttatacacaattcaactgttg 10524
Query: 146 gaagcactgatatccacgagac 167
||||||||||||||||||||||
Sbjct: 10525 gaagcactgatatccacgagac 10546
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6860
Number of Sequences: 1807
Number of extensions: 6860
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)