BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF04RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1578 1685 0.0
>3x_Contig1578
Length = 13178
Score = 1685 bits (850), Expect = 0.0
Identities = 867/872 (99%), Gaps = 1/872 (0%)
Strand = Plus / Plus
Query: 50 ttgcatcgtataatcatgttataagtatccttcaataaaacgtatctttccactttgtgt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8008 ttgcatcgtataatcatgttataagtatccttcaataaaacgtatctttccactttgtgt 8067
Query: 110 tattttatattccatctaccctatataactgatttaggcgtgatggtcgagtgttcatcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8068 tattttatattccatctaccctatataactgatttaggcgtgatggtcgagtgttcatcc 8127
Query: 170 tcgcgtccagccaaataccttggaccggctcccaggccagcctatttgaaagtcacgtga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8128 tcgcgtccagccaaataccttggaccggctcccaggccagcctatttgaaagtcacgtga 8187
Query: 230 attaattacccggctgctgatagccttccgttgtttctccccttaaggaatttctttact 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8188 attaattacccggctgctgatagccttccgttgtttctccccttaaggaatttctttact 8247
Query: 290 ttctgatggtaattagaatatgtaacatgtaatgatgatacaatgttgatagtttgatag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8248 ttctgatggtaattagaatatgtaacatgtaatgatgatacaatgttgatagtttgatag 8307
Query: 350 taaaagttgtaagcaagctcttggttgacaaaagttaacagcattcagccatatcccact 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8308 taaaagttgtaagcaagctcttggttgacaaaagttaacagcattcagccatatcccact 8367
Query: 410 caggttttctttgaatatgtcggatgttaaagaaattatagctaaggtacgttttttctc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8368 caggttttctttgaatatgtcggatgttaaagaaattatagctaaggtacgttttttctc 8427
Query: 470 catcatttatgttgaaaggtcaaatcaataagtctaggaaagtatgatgacaatggttga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8428 catcatttatgttgaaaggtcaaatcaataagtctaggaaagtatgatgacaatggttga 8487
Query: 530 ccttattctcgcctgaacccctaatactaacaataaacatatgcaaaccctagccataat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8488 ccttattctcgcctgaacccctaatactaacaataaacatatgcaaaccctagccataat 8547
Query: 590 gtgatgaaagaggaagtgatttatcattcgtattctctctttttcacttaatggtatgga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8548 gtgatgaaagaggaagtgatttatcattcgtattctctctttttcacttaatggtatgga 8607
Query: 650 aacatatctcatgtcatttttgtaataggccgaaaagaaggctaaaccatcatcaggatt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8608 aacatatctcatgtcatttttgtaataggccgaaaagaaggctaaaccatcatcaggatt 8667
Query: 710 tttcagtttccttagcggttcagactcttaccgttacgaagaagcagcagatctttatat 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8668 tttcagtttccttagcggttcagactcttaccgttacgaagaagcagcagatctttatat 8727
Query: 770 cgaggctgcaaacctctataggctaagaaaggagttggatcaagcgggtgatactttctt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8728 cgaggctgcaaacctctataggctaagaaaggagttggatcaagcgggtgatactttctt 8787
Query: 830 gnaggcagcagagtgtcaaatacaggcttctaatgaagatgaagcaggnaatacgtttat 889
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 8788 gagggcagcagagtgtcaaatacaggcttctaatgaagatgaagcaggaaatacgtatat 8847
Query: 890 cgaagcctacaagtgttt-aagacaggatctt 920
|||||||||||||||||| |||||||||||||
Sbjct: 8848 cgaagcctacaagtgtttcaagacaggatctt 8879
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6759
Number of Sequences: 1807
Number of extensions: 6759
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)