BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF05FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1406 1592 0.0
>3x_Contig1406
Length = 8172
Score = 1592 bits (803), Expect = 0.0
Identities = 842/850 (99%), Gaps = 4/850 (0%)
Strand = Plus / Plus
Query: 87 taacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttctcgtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6250 taacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttctcgtc 6309
Query: 147 tgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaactag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6310 tgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaactag 6369
Query: 207 aaaaaagaatcaaattactgtaccaaatgtatgaacgaccaactccacaaaacgtaacgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370 aaaaaagaatcaaattactgtaccaaatgtatgaacgaccaactccacaaaacgtaacgg 6429
Query: 267 aattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagataaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6430 aattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagataaca 6489
Query: 327 cgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaacaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6490 cgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaacaaca 6549
Query: 387 accttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtgtttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6550 accttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtgtttg 6609
Query: 447 tactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacgggtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6610 tactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacgggtt 6669
Query: 507 tgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctatttatgag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6670 tgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctatttatgag 6729
Query: 567 tatcggttctgtcattagaagtgatggaacttccgacaactcccacaacaatggtttcta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6730 tatcggttctgtcattagaagtgatggaacttccgacaactcccacaacaatggtttcta 6789
Query: 627 ccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagctaaaca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6790 ccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagctaaaca 6849
Query: 687 aacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatgggtcagagg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6850 aacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatgggtcagagg 6909
Query: 747 cagcggtacctactaatctnttcgtatctactctatttctgtcctctcggtatattttta 806
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6910 cagcggtacctactaatcttttcgtatctactctatttctgtcctctcggtatattttta 6969
Query: 807 agtaaaatgaatattgtaaataggaatttaagatgatcaatttttcgagaggagctgatg 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6970 agtaaaatgaatattgtaaataggaatttaagatgatcaatttttcgagaggagctgatg 7029
Query: 867 aagt-aagaacctggggagattac-gtac-cacgttaggatcacaaa-gcatactgcgag 922
|||| ||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||
Sbjct: 7030 aagtaaagaacctggggagattacagtacacacgtagggatcacaaaggcatactgcgag 7089
Query: 923 cttcaaaatt 932
||||| ||||
Sbjct: 7090 cttcagaatt 7099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6298
Number of Sequences: 1807
Number of extensions: 6298
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)