BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC48ZF06FM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1228 1542 0.0 >3x_Contig1228 Length = 5992 Score = 1542 bits (778), Expect = 0.0 Identities = 843/860 (98%), Gaps = 4/860 (0%) Strand = Plus / Plus Query: 87 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 521 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 580 Query: 147 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 640 Query: 207 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 700 Query: 267 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 760 Query: 327 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 820 Query: 387 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 880 Query: 447 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 940 Query: 507 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 1000 Query: 567 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1001 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 1060 Query: 627 gtggaagatgaacctcanacctgggtcgacgtcgctgaagcgatcattgatttagggaac 686 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1061 gtggaagatgaacctcaaacctgggtcgacgtcgctgaagcgatcattgatttagggaac 1120 Query: 687 ctttacgattacgaatcngaagaacaggaagactcttacaagagagcagaggaaatttta 746 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 ctttacgattacgaatcgaaagaacaggaagactcttacaagagagcagaggaaatttta 1180 Query: 747 ctgaaggctaacaaggcaactcatggtaaataccaagttattctggaccatttgttgaac 806 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 1181 ctgaaggctaacaaggcaactcatggtaaataccaagttatcctggacaatttgttgaac 1240 Query: 807 aaagattaagtttcccctcaatgtatagtggaaatttttagttttataggaaaaccagaa 866 ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 1241 aaagattaagtttcccctcaatgtatagtggaaatatttagttttatagaaaaacaagaa 1300 Query: 867 ttaaattatttatatattacgatatgttgaacatgaacacccttatgatttgtgtttcgg 926 |||||||||| |||| |||||||| ||||||||||||||| ||||||||||||| | | Sbjct: 1301 ttaaattattataatataacgatatg-tgaacatgaacaccc-tatgatttgtgttac-g 1357 Query: 927 gcactggcattcctatattc 946 ||||||||| |||||||||| Sbjct: 1358 gcactggca-tcctatattc 1376 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7373 Number of Sequences: 1807 Number of extensions: 7373 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)