BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZF06FM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1228                                                        1542   0.0  

>3x_Contig1228 
          Length = 5992

 Score = 1542 bits (778), Expect = 0.0
 Identities = 843/860 (98%), Gaps = 4/860 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521  tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 580

                                                                        
Query: 147  gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581  gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 640

                                                                        
Query: 207  aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641  aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 700

                                                                        
Query: 267  gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 760

                                                                        
Query: 327  tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761  tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 820

                                                                        
Query: 387  gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821  gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 880

                                                                        
Query: 447  acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881  acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 940

                                                                        
Query: 507  atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 1000

                                                                        
Query: 567  gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 1060

                                                                        
Query: 627  gtggaagatgaacctcanacctgggtcgacgtcgctgaagcgatcattgatttagggaac 686
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 gtggaagatgaacctcaaacctgggtcgacgtcgctgaagcgatcattgatttagggaac 1120

                                                                        
Query: 687  ctttacgattacgaatcngaagaacaggaagactcttacaagagagcagaggaaatttta 746
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 ctttacgattacgaatcgaaagaacaggaagactcttacaagagagcagaggaaatttta 1180

                                                                        
Query: 747  ctgaaggctaacaaggcaactcatggtaaataccaagttattctggaccatttgttgaac 806
            ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1181 ctgaaggctaacaaggcaactcatggtaaataccaagttatcctggacaatttgttgaac 1240

                                                                        
Query: 807  aaagattaagtttcccctcaatgtatagtggaaatttttagttttataggaaaaccagaa 866
            ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 1241 aaagattaagtttcccctcaatgtatagtggaaatatttagttttatagaaaaacaagaa 1300

                                                                        
Query: 867  ttaaattatttatatattacgatatgttgaacatgaacacccttatgatttgtgtttcgg 926
            ||||||||||   |||| |||||||| ||||||||||||||| ||||||||||||| | |
Sbjct: 1301 ttaaattattataatataacgatatg-tgaacatgaacaccc-tatgatttgtgttac-g 1357

                                
Query: 927  gcactggcattcctatattc 946
            ||||||||| ||||||||||
Sbjct: 1358 gcactggca-tcctatattc 1376


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7373
Number of Sequences: 1807
Number of extensions: 7373
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)