BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZF06RM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1355                                                        1207   0.0  

>3x_Contig1355 
          Length = 8652

 Score = 1207 bits (609), Expect = 0.0
 Identities = 664/681 (97%), Gaps = 1/681 (0%)
 Strand = Plus / Plus

                                                                       
Query: 270 cacaaagagaaaacttcatgctttcttgtggtgacgataagacggtgaagctatggtcag 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cacaaagagaaaacttcatgctttcttgtggtgacgataagacggtgaagctatggtcag 60

                                                                       
Query: 330 tgaattctgacgacttttccaacgttaaagatgatacaagattgaatacagatgaaggta 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaattctgacgacttttccaacgttaaagatgatacaagattgaatacagatgaaggta 120

                                                                       
Query: 390 tcatcaaaacattccatggtgaacatgctttccaatctttggatcatcatagacaaaaat 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcatcaaaacattccatggtgaacatgctttccaatctttggatcatcatagacaaaaat 180

                                                                       
Query: 450 cgaattttgttactggtggtgcccaaatcgaactttgggatacaaacagatcaaagccaa 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaattttgttactggtggtgcccaaatcgaactttgggatacaaacagatcaaagccaa 240

                                                                       
Query: 510 tatcaaatctttcatggggtgcggacaatatcaatcatgttagatttaatcaaaatgagg 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatcaaatctttcatggggtgcggacaatatcaatcatgttagatttaatcaaaatgagg 300

                                                                       
Query: 570 tcgacattttagcaagtacgggtagtgataactctgtggttctttatgacctaagaacaa 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgacattttagcaagtacgggtagtgataactctgtggttctttatgacctaagaacaa 360

                                                                       
Query: 630 actctccaacacaaaaaattgttcaaaccatgaggacaaactctatctgttggaacccag 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actctccaacacaaaaaattgttcaaaccatgaggacaaactctatctgttggaacccag 420

                                                                       
Query: 690 tggaagccttcaacttcgtaattgccaatgaagatcataatgcttattactatgatatga 749
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggaagccttcaacttcgtaattgccaatgaagatcataatgcttattactatgatatga 480

                                                                       
Query: 750 gaaatatgtccaaagctttgcatgtgtttaaagatcatgttagtgctgttatggatgttg 809
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaaatatgtccaaagctttgcatgtgtttaaagatcatgttagtgctgttatggatgttg 540

                                                                       
Query: 810 atttttcccctactgttgacgaagttgttacatgcttctatgataagacattcagaattt 869
           ||||||||||||||| |||||||||||| ||| ||| ||||||||||||| |||||||||
Sbjct: 541 atttttcccctactggtgacgaagttgtaacaggctcctatgataagacaatcagaattt 600

                                                                       
Query: 870 acaaagttaaacattgtcattcgaggagaatatttcttccaaagaggatgcagcatattt 929
           || ||||||||||| ||||||||||   ||||| || | ||||||| |||||||||| ||
Sbjct: 601 accaagttaaacatggtcattcgagagaaatatatcatacaaagagaatgcagcata-tt 659

                                
Query: 930 ttccaggtgaaatttaccatg 950
           ||||| ||||||| |||||||
Sbjct: 660 ttccaagtgaaatataccatg 680


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7411
Number of Sequences: 1807
Number of extensions: 7411
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)