BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 1411 0.0
>3x_Contig1790
Length = 27369
Score = 1411 bits (712), Expect = 0.0
Identities = 753/764 (98%), Gaps = 2/764 (0%)
Strand = Plus / Plus
Query: 51 catttctattctcgccacaccagaaatgaaaatggactaaaaagctagcattgaaaaggt 110
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14425 catttctat-ctcgccacaccagaaatgaaaatggactaaaaagctagcattgaaaaggt 14483
Query: 111 cggatactttattcatcaatgttatcattggtttagagaaaaggttgttttttttggggt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14484 cggatactttattcatcaatgttatcattggtttagagaaaaggttgttttttttggggt 14543
Query: 171 atgataagacaaagtttgcatcctacttcagtttagtctagctgttggtgcgtgccgttc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14544 atgataagacaaagtttgcatcctacttcagtttagtctagctgttggtgcgtgccgttc 14603
Query: 231 tatgattttggcacattgaagggatgctgtcaaaaatgctgtcatttttttttgtcacat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14604 tatgattttggcacattgaagggatgctgtcaaaaatgctgtcatttttttttgtcacat 14663
Query: 291 aatttgttacatcttcttttgttgctcgaaaggctggtcgattgattggtcgtaaagttt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14664 aatttgttacatcttcttttgttgctcgaaaggctggtcgattgattggtcgtaaagttt 14723
Query: 351 cacggaggtgcataggagagtaacaaaaaggcaaaaaactttatcattgattttttgaca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14724 cacggaggtgcataggagagtaacaaaaaggcaaaaaactttatcattgattttttgaca 14783
Query: 411 ccttttccttcgagatatctgagcaaacgatgtcgaatcattgacctgtcatatctttat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14784 ccttttccttcgagatatctgagcaaacgatgtcgaatcattgacctgtcatatctttat 14843
Query: 471 caaacagcaacaaaggaaagaaccttaggtaaatggctgctgattggagagctgtgtgtt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14844 caaacagcaacaaaggaaagaaccttaggtaaatggctgctgattggagagctgtgtgtt 14903
Query: 531 taggaattctgtttgaatataaaaagggagtaatatgcaatctttcctttggttggaaca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14904 taggaattctgtttgaatataaaaagggagtaatatgcaatctttcctttggttggaaca 14963
Query: 591 cctaccccaatagaaatgcatacgcctttccctcctctgtacggcagctttctgcaatct 650
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 14964 cctaccccaatagaaatgcatacgcctttccctcctctgtacggcagcttcctgcaatct 15023
Query: 651 ttaacattctattttgtcattgggtcatttactcgagtaagccataaggttcggtcgctg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15024 ttaacattctattttgtcattgggtcatttactcgagtaagccataaggttcggtcgctg 15083
Query: 711 tagttcatcatgaatcatattaaatccggtctgcttggtgacgctccggttactgagaaa 770
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 15084 tagttcatcatgaatcatattaaatccgttctgtctgctgacgctccggttactgagaaa 15143
Query: 771 gttttgctaaatgttggacaagaaccgaaccttcattaattcat 814
||| ||||| |||||||||||||| || | ||||||||||||||
Sbjct: 15144 gttctgctagatgttggacaagaa-cgtagcttcattaattcat 15186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8788
Number of Sequences: 1807
Number of extensions: 8788
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)