BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF08FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig620 827 0.0
3x_Contig1529 165 2e-40
>3x_Contig620
Length = 2176
Score = 827 bits (417), Expect = 0.0
Identities = 439/445 (98%), Gaps = 1/445 (0%)
Strand = Plus / Minus
Query: 88 ttcctttagctattttgaaagcactaccacttatcttataacctttatagatcaaatcgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttcctttagctattttgaaagcactaccacttatcttataacctttatagatcaaatcgc 393
Query: 148 ctctatcgttcaacgtaatgttctcattacttaaccattgtacaagttgctgattgaaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctctatcgttcaacgtaatgttctcattacttaaccattgtacaagttgctgattgaaga 333
Query: 208 actctctgcggaaactttctctcgacgtcaaatacgaatagttaacatttcctaaatcat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actctctgcggaaactttctctcgacgtcaaatacgaatagttaacatttcctaaatcat 273
Query: 268 gcactactgcacctccacctgaacgtcttcttacaaaattgtaccctcttgatgcgatat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcactactgcacctccacctgaacgtcttcttacaaaattgtaccctcttgatgcgatat 213
Query: 328 ttctcatgtacgtttccttccatgggttttgattcttaccgacaacgacacatttatcat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttctcatgtacgtttccttccatgggttttgattcttaccgacaacgacacatttatcat 153
Query: 388 tggtataaagcagtattctttcatttcccgttttgttctcagttaaaggcgtattacgaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tggtataaagcagtattctttcatttcccgttttgttctcagttaaaggcgtattacgaa 93
Query: 448 aca-catagtcctctaaagctaggttgaagtatgggttggtagatacacttctgatgacg 506
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 92 acagcatagtcctctaaagctaggttgaagtatgggttggtagatacataaatgatgacg 33
Query: 507 aaccttccattactttttaccgcgt 531
|||||||||||||| ||||||||||
Sbjct: 32 aaccttccattactctttaccgcgt 8
>3x_Contig1529
Length = 11812
Score = 165 bits (83), Expect = 2e-40
Identities = 121/130 (93%), Gaps = 3/130 (2%)
Strand = Plus / Plus
Query: 787 atagcgttgtcgctactcgatgcgtacatttactgatcatgaatgcttctcacccattag 846
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 2 atagcgttgtcgctactcgatgcgtacatttactgatcatggatgcttctcaccca-tag 60
Query: 847 a-gttcttacanattgttccacccaacgaaatttatatcttcatcttcac-acgttgtgc 904
| || || ||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 aggtcctcacaaattgttcagcccaacgaaatttatatcttcatcttcacaacgttgtgc 120
Query: 905 atggaagtaa 914
||||||||||
Sbjct: 121 atggaagtaa 130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6536
Number of Sequences: 1807
Number of extensions: 6536
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)