BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF09FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig246 1413 0.0
>3x_Contig246
Length = 1071
Score = 1413 bits (713), Expect = 0.0
Identities = 757/769 (98%), Gaps = 2/769 (0%)
Strand = Plus / Minus
Query: 86 ttcactataatcaggtggttcattactgtctcgtgtttttccgtgctggtttttcctgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ttcactataatcaggtggttcattactgtctcgtgtttttccgtgctggtttttcctgat 712
Query: 146 tttatttttggttcatttaacagaggtctgttttaacagtcagagaaagattttatcata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tttatttttggttcatttaacagaggtctgttttaacagtcagagaaagattttatcata 652
Query: 206 aggggctgaaattagctggatatatagtgcatccaaggattcaattttacaagagaatta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aggggctgaaattagctggatatatagtgcatccaaggattcaattttacaagagaatta 592
Query: 266 ctgcgacttaaagctcttttggtgactagttcttcgctttgaatcaatcaaagaaaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctgcgacttaaagctcttttggtgactagttcttcgctttgaatcaatcaaagaaaaaaa 532
Query: 326 ttcagtaaaagaaccaatcaccaatgaagaaaacgtcgagaagtctgtcactttttgata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttcagtaaaagaaccaatcaccaatgaagaaaacgtcgagaagtctgtcactttttgata 472
Query: 386 tacggctagaaggcactgaccatgatgtgatagtggttaagggaacggttgatgaagcgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tacggctagaaggcactgaccatgatgtgatagtggttaagggaacggttgatgaagcgc 412
Query: 446 cctcagttctactgagcggatccgtagttctttcagtgagagaacccatttatgccaaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cctcagttctactgagcggatccgtagttctttcagtgagagaacccatttatgccaaaa 352
Query: 506 agatttctttgaccttgtatggtgtgattaagctaaatgtcactactatggtacaaggtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agatttctttgaccttgtatggtgtgattaagctaaatgtcactactatggtacaaggtc 292
Query: 566 ctaggggacctgctccaagaaatgtgaagtacgatagacggttctacgagctatcccttg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctaggggacctgctccaagaaatgtgaagtacgatagacggttctacgagctatcccttg 232
Query: 626 acgatatagatctttatcctcatctagtggatggatcgactgtcaagaagccattgagta 685
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 acgatatagatcttcatcctcatctagtggatggatcgactgtcaagaagccattgagta 172
Query: 686 gaactaattcgtcatccagtttaggtggccttgcatcgcttagtaccacatcattgaaga 745
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 171 gaactaattcgtcatccagtttaggtggccttgcatcgctaagtaccacatcattgaaga 112
Query: 746 ttttcgcattatctgctagccttgcaagtgtttttacccgaagggtactatgtattccca 805
|||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct: 111 atttcgcatcatctgctagccatgcaagtg-ttttacccgaaggtaactatgtattccca 53
Query: 806 ttcagtaccattattaccgggctcttttaccgaaagtgtttagggtttg 854
|||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct: 52 ttcagtacca-tattaccgggctctcttaccgaaagtgtcgagggtttg 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7098
Number of Sequences: 1807
Number of extensions: 7098
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)