BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF09RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig900 1479 0.0
>3x_Contig900
Length = 3046
Score = 1479 bits (746), Expect = 0.0
Identities = 759/762 (99%), Gaps = 1/762 (0%)
Strand = Plus / Plus
Query: 48 ttgtgagatgcttcgtgtcagtacgctgttcggaaaccagtatataagaaggttttccaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 ttgtgagatgcttcgtgtcagtacgctgttcggaaaccagtatataagaaggttttccaa 1446
Query: 108 tgggtcgatacatttagcgaagaacccgtggctcaagaggcgatctttggagcagctttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 tgggtcgatacatttagcgaagaacccgtggctcaagaggcgatctttggagcagctttc 1506
Query: 168 gaaatcattaccagctgtgccgacgcctgttttggaagtagtgcacaaatgcagtgatga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 gaaatcattaccagctgtgccgacgcctgttttggaagtagtgcacaaatgcagtgatga 1566
Query: 228 tgtacctttggatgaagaacaaaggttaacgataaaagactacttaacacacgaggaaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 tgtacctttggatgaagaacaaaggttaacgataaaagactacttaacacacgaggaaac 1626
Query: 288 agaaatacccactgttgacaggtccatcttgttgaaatatttgtatggtaagaaagagta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 agaaatacccactgttgacaggtccatcttgttgaaatatttgtatggtaagaaagagta 1686
Query: 348 cgatatggtagaaaccatggccaagttacatttatttgataaagacggatactttctgga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 cgatatggtagaaaccatggccaagttacatttatttgataaagacggatactttctgga 1746
Query: 408 aacatctactgtgaacaacgttcaagtttatttcgaagttctaatccagacaaagcaact 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 aacatctactgtgaacaacgttcaagtttatttcgaagttctaatccagacaaagcaact 1806
Query: 468 tgacaagttaacggaagaagctgttaagtacatatcacagttttctattaataagcaggg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 tgacaagttaacggaagaagctgttaagtacatatcacagttttctattaataagcaggg 1866
Query: 528 aacatctgtgtacatggtaaattatttgttcgttaaattgtatcaaaatttctcgcctca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 aacatctgtgtacatggtaaattatttgttcgttaaattgtatcaaaatttctcgcctca 1926
Query: 588 agatgccctatacatctggaccaaacttgtcagtgtttactacggacattgtgaattgac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1927 agatgccctatacatctggaccaaacttgtcagtgtttactacggacattgtgaattgac 1986
Query: 648 tagtatggatatatatgggccgatactaaatcatttgtactatttctttaaggccagcaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 tagtatggatatatatgggccgatactaaatcatttgtactatttctttaaggccagcaa 2046
Query: 708 agaatcgcatcaatgtgtcctgccgttgttaaaacgtatgcaaaatgaggatggcattat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2047 agaatcgcatcaatgtgtcctgccgttgttaaaacgtatgcaaaatgaggatggcataat 2106
Query: 768 gcccgctttacattttagcatcgacattgataactttttttt 809
|||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 2107 gcccgcttcaca-tttagcatcgacattgataactttttttt 2147
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7778
Number of Sequences: 1807
Number of extensions: 7778
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)