BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF10FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1351 1336 0.0
>3x_Contig1351
Length = 9242
Score = 1336 bits (674), Expect = 0.0
Identities = 764/784 (97%), Gaps = 8/784 (1%)
Strand = Plus / Minus
Query: 88 cctcgaagtattttgggagtgtatcttaagcattttaacgtttgcctgtgtttttacttc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 cctcgaagtattttgggagtgtatcttaagcattttaacgtttgcctgtgtttttacttc 3554
Query: 148 gataactagaatcaaatatcagttcatatgtctgagggacgaaatgaaggaagtattccc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3553 gataactagaatcaaatatcagttcatatgtctgagggacgaaatgaaggaagtattccc 3494
Query: 208 gagtttgatttcacacaattattgcaatcccaagggttagatgagccaggagttgcaaca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 gagtttgatttcacacaattattgcaatcccaagggttagatgagccaggagttgcaaca 3434
Query: 268 cgcagggaaattcctttggaaaataacatcataccggccagtgtgaaacatcgggaccat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 cgcagggaaattcctttggaaaataacatcataccggccagtgtgaaacatcgggaccat 3374
Query: 328 cctgtagtgcatttattgaaaaaagtggatgttgggtctacaatactttgcatcgtaata 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3373 cctgtagtgcatttattgaaaaaagtggatgttgggtctacaatactttgcatcgtaata 3314
Query: 388 cctttattctcgttgttcaaacttatccttgataaaccagagtataatgcggacctccta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 cctttattctcgttgttcaaacttatccttgataaaccagagtataatgcggacctccta 3254
Query: 448 aaattgttggtttgttactggtttctgtctgaaatcagtcttatcgcggggtatcatagg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 aaattgttggtttgttactggtttctgtctgaaatcagtcttatcgcggggtatcatagg 3194
Query: 508 tttttcacccacagttcctaccaatgtcatatcgctatacaatttacaatggccatctta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3193 tttttcacccacagttcctaccaatgtcatatcgctatacaatttacaatggccatctta 3134
Query: 568 ggtgcctcatgtggattgggatccatccttgatttcaccagtcaacatatggtacatcac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 ggtgcctcatgtggattgggatccatccttgatttcaccagtcaacatatggtacatcac 3074
Query: 628 cgtcatattgatactgaaagagacccacattcgcagcatgtntacgggtggttgntctct 687
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 3073 cgtcatattgatactgaaagagacccacattcgcagcatgtttacgggtggttgttctct 3014
Query: 688 ctttggggacataggttttttcgcggttataggaaatcggtgaaagctgtacct-aatgc 746
|||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||
Sbjct: 3013 ctttggggacataggtttttccgcggtaataggaaatcggtgaaagctgtagctaaatgc 2954
Query: 747 cgagagactattgtgtctactgc-agagc-acatatgataaccccacaccaaatttgatt 804
||||||||||||||||||||||| ||||| ||||||||||||| |||| || | ||||||
Sbjct: 2953 cgagagactattgtgtctactgcaagagcaacatatgataaccacacaacacaattgatt 2894
Query: 805 agattcagt-agttattcctttacttttttgggcaagatgctcaattattttcaactttg 863
||| ||||| ||||| |||||||||| ||| ||||||||||| |||||||| ||||| ||
Sbjct: 2893 aga-tcagtaagtta-tcctttacttcttt-ggcaagatgct-aattatttacaactatg 2838
Query: 864 gatt 867
||||
Sbjct: 2837 gatt 2834
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5595
Number of Sequences: 1807
Number of extensions: 5595
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)