BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1427 1524 0.0
>3x_Contig1427
Length = 10253
Score = 1524 bits (769), Expect = 0.0
Identities = 821/832 (98%), Gaps = 5/832 (0%)
Strand = Plus / Minus
Query: 47 tgaagaaattccttgagagagcagaaactcaagagaaacaaattaagaagttcgttcttg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10168 tgaagaaattccttgagagagcagaaactcaagagaaacaaattaagaagttcgttcttg 10109
Query: 107 aacaacagagaaaatataaatggtcttccaaccaagggccagcttcacgtatatcatcag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10108 aacaacagagaaaatataaatggtcttccaaccaagggccagcttcacgtatatcatcag 10049
Query: 167 gatcgttgctatttcaggaacatttaccttctgttcgattgaggaagaattcttcagttg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10048 gatcgttgctatttcaggaacatttaccttctgttcgattgaggaagaattcttcagttg 9989
Query: 227 gctcatacctttcgaaatgtgaaagatatatacacccgtttgcgccgaccgaagttagag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9988 gctcatacctttcgaaatgtgaaagatatatacacccgtttgcgccgaccgaagttagag 9929
Query: 287 aaatacttctctatgatgttactaaatcgaaagaaaagatcgaaccaccagaatccacta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9928 aaatacttctctatgatgttactaaatcgaaagaaaagatcgaaccaccagaatccacta 9869
Query: 347 ttcttgtgcatgtacaaaagaaggaccttttcgcagttgtaaatggcggtagaatagcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9868 ttcttgtgcatgtacaaaagaaggaccttttcgcagttgtaaatggcggtagaatagcac 9809
Query: 407 ctgatcagttgttggccgtaataaatcaatacgagaacggagggtggaagttgataggcg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9808 ctgatcagttgttggccgtaataaatcaatacgagaacggagggtggaagttgataggcg 9749
Query: 467 atgtgaacagagatacttacaagattgtcttccagaagaattacatgagaccagcactca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9748 atgtgaacagagatacttacaagattgtcttccagaagaattacatgagaccagcactca 9689
Query: 527 tagagaccaaaggaaaaatagctatcactttatttggtattaccctaggatacatagccg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9688 tagagaccaaaggaaaaatagctatcactttatttggtattaccctaggatacatagccg 9629
Query: 587 ttgtccaaccactaatcgactatattaattatttcaatcgataaattaatattgtatact 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9628 ttgtccaaccactaatcgactatattaattatttcaatcgataaattaatattgtatact 9569
Query: 647 gtacaatccgaatgacactcatataggaaaaacagaattaaaaatgtatgaatagntaat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9568 gtacaatccgaatgacactcatataggaaaaacagaattaaaaatgtatgaatagttaat 9509
Query: 707 ctttatatatatatctatagtacaataccccttctgatcaaccgtgtgtgtagaaaatga 766
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9508 ctttatatatatatctatagtacaata-cccttctgatcaaccgtgtgtgtagaaaatga 9450
Query: 767 catccgaaattgatcgacattatcaagtccatttcaatgtctttttatttcaccactagt 826
|||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||| |||
Sbjct: 9449 catccgaaattgatcgacattatc-agttcatttcaatgtc-ttttaattcaccaatagg 9392
Query: 827 ttttacaggttttgttcccccccagaacctttttcgcctttatcattgattc 878
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 9391 ttttacaggttttgtt-cccccaagaacc-ttttcgcctttatcattgattc 9342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9389
Number of Sequences: 1807
Number of extensions: 9389
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)