BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZF11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig881 1447 0.0
>3x_Contig881
Length = 2934
Score = 1447 bits (730), Expect = 0.0
Identities = 853/886 (96%), Gaps = 6/886 (0%)
Strand = Plus / Plus
Query: 40 acatcttctaatgtgatagtgt-caatggcggcacaacttctggtggcatattaatcaat 98
|||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 33 acatcttctaatgtgatagtgtacaatggcggcacaacctctggtggcattataatcaat 92
Query: 99 ctttcactcaagactaacgaacaagtcttctccgattgatctatagtttgtaggaaagta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ctttcactcaagactaacgaacaagtcttctccgattgatctatagtttgtaggaaagta 152
Query: 159 gctagcttggggtcaactttacgaagatatttggcataatcactatctttgttggccttg 218
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gctggcttggggtcaactttacgaagatatttggcataatcactatctttgttggccttg 212
Query: 219 taatcgataaatgataggaaacagtatgggtcagactccttaccatcggttttgatggta 278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 213 taatcgataaatgataggaaacagtatgggtcagacgccttaccatcggttttgatggta 272
Query: 279 gtagttggtgagtccaagattaaatttgccaattcacttagttgaattctgttcgattcc 338
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtagttggtgagtccaagatgaaatttgccaattcacttagttgaattctgttcgattcc 332
Query: 339 tgtggtccaaacaactgacgcatcagattcttcaaagcatggaaatcaacgtcgggatta 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgtggtccaaacaactgacgcatcagattcttcaaagcatggaaatcaacgtcgggatta 392
Query: 399 ccattgaagaaatc-aaaatcgatgttgatgatttcttgttcctcttgaccgttttcttg 457
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccattgaagaaatcaaaaatcgatgttgatgatttcttgttcctcttgaccgttttcttg 452
Query: 458 gtctgaaatatttgagtctgtacttgatatgtcaagatcagattcctcatcgactgcacg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtctgaaatatttgagtctgtacttgatatgtcaagatcagattcctcatcgactgcacg 512
Query: 518 tttcttggataatgcacttaatttaacaacctggaccattgcagactaaaatagagtgtt 577
| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 513 tgtcttggataatgcacttaatttaacaacctggaccatcgcagacccaaatagagtgtt 572
Query: 578 gttgctggtttaataaagcccaactaataactattgtttatctctttgaaacttcctcga 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gttgctggtttaataaagcccaactaataactattgtttatctctttgaaacttcctcga 632
Query: 638 atctattctaaagtagtgatgagctcgccaaatgcaggtttgcatcaaatttaaagaata 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 atctattctaaagtagtgatgagctcgccaaatgcaggtttgcatcaaatttaaagaata 692
Query: 698 gtttcttttcg-aaaggtaaagatgacatgcgatgctgtcaagaatgtataaatgaaagg 756
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 693 gtctcttttcgaaaaggtaaagatgacatgcgatgctgtcaagaatgtaaaaatgaaagg 752
Query: 757 gataattaaaatatcaatcaccgagtcccttgtcaggtgttatcgtgtacagcgaaatgc 816
||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct: 753 gataaccaaaatctcaatcagcgagtcccttgtcagttgttatcgtgtacagcgaattgc 812
Query: 817 tattaccggtaatcttagttttaatcttttaaaagactgcaataggggagtcatgggttc 876
||||| |||||||| || ||| |||||||| ||||||||| |||||||||||| |||||
Sbjct: 813 tatta-cggtaatcctaagttttatcttttagaagactgcagtaggggagtcat-ggttc 870
Query: 877 atctaaaagcaccgtgaccatatttaagatacctctgggaacatat 922
||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct: 871 atctagaagca-cgtgctcatatttaagatacctctgggaacatat 915
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7494
Number of Sequences: 1807
Number of extensions: 7494
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)