BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG01FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1510 1298 0.0
>3x_Contig1510
Length = 10278
Score = 1298 bits (655), Expect = 0.0
Identities = 728/743 (97%), Gaps = 7/743 (0%)
Strand = Plus / Plus
Query: 88 gaatcaacaagacagatccaaacgaattgtctgcagaggaaagtgccagatttgcaagat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 gaatcaacaagacagatccaaacgaattgtctgcagaggaaagtgccagatttgcaagat 7573
Query: 148 tagatatagaccctgaaactatcacctggcgacgtgttgtggactgtaatgacagattct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 tagatatagaccctgaaactatcacctggcgacgtgttgtggactgtaatgacagattct 7633
Query: 208 tgagaggaattactgtcggccaagccccaacagaacgtggccacaccagatataccggtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 tgagaggaattactgtcggccaagccccaacagaacgtggccacaccagatataccggtt 7693
Query: 268 tcgatatctcagttgcatcagaatgtatggctgttcttgcccttgccaactctttggaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 tcgatatctcagttgcatcagaatgtatggctgttcttgcccttgccaactctttggaag 7753
Query: 328 atatgagagaaaggctaggtagaatagtcattgctgcttccaaatccggtgaaccaatca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7754 atatgagagaaaggctaggtagaatagtcattgctgcttccaaatccggtgaaccaatca 7813
Query: 388 cttgtgaagatattggatgtgctggtgccatgacagctctattaaaggatgctataaagc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7814 cttgtgaagatattggatgtgctggtgccatgacagctctattaaaggatgctataaagc 7873
Query: 448 caaatattatgcaaactttggaaggtaccccagtgtttgtacacgctggtccattcgcca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7874 caaatattatgcaaactttggaaggtaccccagtgtttgtacacgctggtccattcgcca 7933
Query: 508 acatttccatcggtgctaactcagtcttagcggataaaatggcattgaagttggctggtg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7934 acatttccatcggtgctaactcagtcttagcggataaaatggcattgaagttggctggtg 7993
Query: 568 ttccaactgacttaccagaagacgtgaagaaaactcaaaagggttatgtcgttaccgagg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7994 ttccaactgacttaccagaagacgtgaagaaaactcaaaagggttatgtcgttaccgagg 8053
Query: 628 caggtttcgatttcaccatgggtggtgaaagatttattaacattaagtgtagatccagtg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8054 caggtttcgatttcaccatgggtggtgaaagatttattaacattaagtgtagatccagtg 8113
Query: 688 gattggtgcctgatgttgtggtcatcgtggccactgtaagagcttttaaaggttaccgtg 747
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 8114 gattggtgcctgatgttgtggtcatcgtggccactgtaagagc-tttaaaggttcacggt 8172
Query: 748 ggtggttcagaaggttaaggcttggtgccccatttgccattcagattactttgaatgaag 807
|||||| ||||| |||||||| |||||||||| |||||| ||||| ||| ||||||||||
Sbjct: 8173 ggtggtccagaa-gttaaggc-tggtgcccca-ttgcca-tcagaatac-ttgaatgaag 8227
Query: 808 atgtaagattatttgagaaaggg 830
||||| |||| |||||||||||
Sbjct: 8228 atgtagaatta-ttgagaaaggg 8249
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6125
Number of Sequences: 1807
Number of extensions: 6125
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)