BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG01RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1101 1516 0.0
>3x_Contig1101
Length = 4398
Score = 1516 bits (765), Expect = 0.0
Identities = 834/849 (98%), Gaps = 6/849 (0%)
Strand = Plus / Minus
Query: 48 ttacttgaacaaacatcgaaatttttcaccctggaaaccacacatttcccacacacagag 107
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 4243 ttacttgaacaaacatcgaaatttttcacc-tggaaac-acacatttcccacacacagag 4186
Query: 108 ggcattaacgttgatcattagcatctacctgtagactcttgagttgcttgaatcaccgct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4185 ggcattaacgttgatcattagcatctacctgtagactcttgagttgcttgaatcaccgct 4126
Query: 168 agacatattttctgttaaatctgttctagcttccgttattcgtcgctcctgaatcgagac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4125 agacatattttctgttaaatctgttctagcttccgttattcgtcgctcctgaatcgagac 4066
Query: 228 ttattgacatattattcaattcaaagaaataaagtcacctccaagtcatgtcgtccaagc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4065 ttattgacatattattcaattcaaagaaataaagtcacctccaagtcatgtcgtccaagc 4006
Query: 288 taagaattttggtgccagtgaagcgtgttgtggatcatgccatcagacctcgtgtcaaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4005 taagaattttggtgccagtgaagcgtgttgtggatcatgccatcagacctcgtgtcaaca 3946
Query: 348 agcagtttaccaacgttgagaccaagaacttgaagttctctatcaatccgtttgacgata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3945 agcagtttaccaacgttgagaccaagaacttgaagttctctatcaatccgtttgacgata 3886
Query: 408 ttgcagtggaagaatctgtgaaattgaaggaaactcatcctgatgccgtcgaatcaatcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3885 ttgcagtggaagaatctgtgaaattgaaggaaactcatcctgatgccgtcgaatcaatcc 3826
Query: 468 atgccgtttccgttggcccactgaaggcccaagatgtgttgaggacagctttagccaaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3825 atgccgtttccgttggcccactgaaggcccaagatgtgttgaggacagctttagccaaag 3766
Query: 528 gttgtgattcttcaactttggttgagcatgattctaccgaattggagccattggtgatca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3765 gttgtgattcttcaactttggttgagcatgattctaccgaattggagccattggtgatca 3706
Query: 588 gcaaggtgttgaagaaaattgttgaagacaagaatgctaacttggttgtgctcggaaagc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3705 gcaaggtgttgaagaaaattgttgaagacaagaatgctaacttggttgtgctcggaaagc 3646
Query: 648 -agccatcgatgatgatagcaacaacactggtcaaatgctcgctggtttgttgaactggc 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3645 aagccatcgatgatgatagcaacaacactggtcaaatgctcgctggtttgttgaactggc 3586
Query: 707 cacaagctaccaacgcttgttaagtagaaattgtagaagacggcgccagtgtcagagtca 766
|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 3585 cacaagctaccaacgcttgtaaagtagaattgttagaagacggcgccagtgtcagagtca 3526
Query: 767 cc-agggaatcgacggtggtgaagaaatcgtggtcgcaaaattacctatgatcatcacca 825
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3525 ccaaggaaatcgacggtggtgaagaaatcgtggtcgcaaaattacctatgatcatcacca 3466
Query: 826 ctgatctacgtttggatacgccaggatacgcctacgttaccaaaatttgattaaagccaa 885
|||||||||||||| |||||||| |||||| |||||||||| ||||||||| ||||||||
Sbjct: 3465 ctgatctacgtttgaatacgccaagatacg-ctacgttacc-aaatttgatgaaagccaa 3408
Query: 886 gaaaaagcc 894
||| |||||
Sbjct: 3407 gaagaagcc 3399
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6692
Number of Sequences: 1807
Number of extensions: 6692
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)