BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG02FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig871 1413 0.0
>3x_Contig871
Length = 4172
Score = 1413 bits (713), Expect = 0.0
Identities = 738/745 (99%), Gaps = 1/745 (0%)
Strand = Plus / Plus
Query: 86 cagctgcatcggtttcttctgcctctgttgcgtctgttttatctgcttcgttagaaaaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagctgcatcggtttcttctgcctctgttgcgtctgttttatctgcttcgttagaaaaca 548
Query: 146 agaagactgcaattacttcccatactttagctcgtgctaccggtttgttagctattgctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agaagactgcaattacttcccatactttagctcgtgctaccggtttgttagctattgctt 608
Query: 206 cttctaacagtaccaactctactacatctactatacattccattaacacaactacttctg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cttctaacagtaccaactctactacatctactatacattccattaacacaactacttctg 668
Query: 266 aatctcaatctcaatcatccaaaactacagtgtctgcaactttgacttccttgacaagtg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aatctcaatctcaatcatccaaaactacagtgtctgcaactttgacttccttgacaagtg 728
Query: 326 attcttctaccggggcttccacttcaggcacttcagagtctactggtgctgcttaccaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 attcttctaccggggcttccacttcaggcacttcagagtctactggtgctgcttaccaag 788
Query: 386 ttggaattaacgacgctttgattggtgctgccgctggtattgctttggccttcctatgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttggaattaacgacgctttgattggtgctgccgctggtattgctttggccttcctatgat 848
Query: 446 tcctttactttgggagttgtttgctttctcttgagacgatttgtgttgtttattactctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tcctttactttgggagttgtttgctttctcttgagacgatttgtgttgtttattactctt 908
Query: 506 tcgttccttgcttgtttacaagaacatgaggaacgcttaatacttaaaataaaaaaatcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tcgttccttgcttgtttacaagaacatgaggaacgcttaatacttaaaataaaaaaatcc 968
Query: 566 atttgacttttcccgatcttttcctttaatcctttgagctattcctttgatgttcccgca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 atttgacttttcccgatcttttcctttaatcctttgagctattcctttgatgttcccgca 1028
Query: 626 tttaattctctacgtcgctggctatgtgaattaaatcttatctgttctcaaattcgttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 tttaattctctacgtcgctggctatgtgaattaaatcttatctgttctcaaattcgttct 1088
Query: 686 ctaacaccttattttatcatggctgacattgaaagacacttctcaaaatcatgtcacaat 745
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 1089 ctaacaccttattttatcatggctgacaatgaaagacactactcaaaatcatgtcacaat 1148
Query: 746 gatttctattaatcctttcctagttctttacatcattgatcggttagagccttttatata 805
||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1149 gatttctattaatcctttcctagttctctacatcattgatcggttagagctctctatata 1208
Query: 806 taaatatataccccttgtaacaatt 830
|||||||||| ||||||||||||||
Sbjct: 1209 taaatatata-cccttgtaacaatt 1232
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7823
Number of Sequences: 1807
Number of extensions: 7823
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)