BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG02RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1374 1507 0.0
>3x_Contig1374
Length = 8985
Score = 1507 bits (760), Expect = 0.0
Identities = 801/811 (98%), Gaps = 3/811 (0%)
Strand = Plus / Minus
Query: 48 agccttggttcaaacatacatattcagagcaccaattgtgtgggtgaagtgattatcaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8668 agccttggttcaaacatacatattcagagcaccaattgtgtgggtgaagtgattatcaat 8609
Query: 108 cttttcaataatacttagctggaaaattcactcgttttcaatccagtttcaatcaagtta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8608 cttttcaataatacttagctggaaaattcactcgttttcaatccagtttcaatcaagtta 8549
Query: 168 gatccaggttttattaggggcgttgagatagtaattcagcatccgatatcacctatccgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8548 gatccaggttttattaggggcgttgagatagtaattcagcatccgatatcacctatccgg 8489
Query: 228 acttgaaaccactgaggcacttgtcattccttttccgtgaaaatggttcttgaaaaaatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8488 acttgaaaccactgaggcacttgtcattccttttccgtgaaaatggttcttgaaaaaatc 8429
Query: 288 cgagtgtcttctgaaggggagttcattgactctcatgatcgtgtggtacaacttcgtgga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8428 cgagtgtcttctgaaggggagttcattgactctcatgatcgtgtggtacaacttcgtgga 8369
Query: 348 gtgaacttggatccatgcgtcaaatacccgaattcaccaaccgtaacttcgcactctccg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8368 gtgaacttggatccatgcgtcaaatacccgaattcaccaaccgtaacttcgcactctccg 8309
Query: 408 ttacttgactcattttgggattcagcagatgatgcgaactttgtaaaccatcctatcgac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8308 ttacttgactcattttgggattcagcagatgatgcgaactttgtaaaccatcctatcgac 8249
Query: 468 attgatgaagtaaatgaacatattactagattgaagtcgatggggtataataccattcga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8248 attgatgaagtaaatgaacatattactagattgaagtcgatggggtataataccattcga 8189
Query: 528 ttctgttttaattgggaagcattggagcataagggtccagggcagtacgattttgagtac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8188 ttctgttttaattgggaagcattggagcataagggtccagggcagtacgattttgagtac 8129
Query: 588 attgagtacgtacgtcaagttctattgaaaatatatgaaatcggtgatatgtacgtgtat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8128 attgagtacgtacgtcaagttctattgaaaatatatgaaatcggtgatatgtacgtgtat 8069
Query: 648 tttgatccacatcaggatgtatggtccagatttacaggtggatctggagcgcctctntgg 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8068 tttgatccacatcaggatgtatggtccagatttacaggtggatctggagcgcctctttgg 8009
Query: 708 actctatattgcgcggggtttccaaccaaaaagagtttctgtcactcaagctgctatatt 767
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8008 actctatattgcgc-gggtttccaaccaaaaagagtttctgtcactcaagctgctatatt 7950
Query: 768 acataatgaatacatcgacaaagatactgggggaacagtaaaacattacccttagatgtt 827
||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 7949 acataatgaatacatcgacaaagatactgggaaacaagtaaaacattaccctaagatgtt 7890
Query: 828 ttgggccaacgaaatattttcaagttagctt 858
|| |||||||||| || ||||||||||||||
Sbjct: 7889 tt-ggccaacgaatta-tttcaagttagctt 7861
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5844
Number of Sequences: 1807
Number of extensions: 5844
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)