BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG03FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1115 1310 0.0
>3x_Contig1115
Length = 4702
Score = 1310 bits (661), Expect = 0.0
Identities = 742/761 (97%), Gaps = 6/761 (0%)
Strand = Plus / Minus
Query: 88 ttaactgcattcttggcctcttctactaaatttgcattagctatcaaaatgtttcctttt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2903 ttaactgcattcttggcctcttctactaaatttgcattagctatcaaaatgtttcctttt 2844
Query: 148 tcttcgttagtttgttgtgcatgtaataacgattttataatagtttcattgttattcttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2843 tcttcgttagtttgttgtgcatgtaataacgattttataatagtttcattgttattcttt 2784
Query: 208 gcctcatccaattttttttgagcctggaaatcctgattttggatacggctagcatatttg 267
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2783 gcctcatccaattttttttgagcctggaaatcctgattttggatacagctagcatatttg 2724
Query: 268 tttgattctattgtagaaaagaatgtgtctacggtattattgtacattccgccgatttcg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 tttgattctattgtagaaaagaatgtgtctacggtattattgtacattccgccgatttcg 2664
Query: 328 ataattttgacgtcagtggaatctcctacaaagggtttgaagggatggaaatttgaaaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 ataattttgacgtcagtggaatctcctacaaagggtttgaagggatggaaatttgaaaaa 2604
Query: 388 gtgtattcaagttccggcttgtctcttaaaggatcgtacagtttgttcttatgagccact 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 gtgtattcaagttccggcttgtctcttaaaggatcgtacagtttgttcttatgagccact 2544
Query: 448 atataacctattcttgttgacgtagtcgagatcaatttatttgcttgaacttctaatgag 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 atataacctattcttgttgacgtagtcgagatcaatttatttgcttgaacttctaatgaa 2484
Query: 508 gacattaagtcaacaagcacagagacattgtgtttaaactcaagacacgaagaagatgga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 gacattaagtcaacaagcacagagacattgtgtttaaactcaagacacgaagaagatgga 2424
Query: 568 tcaataccaatagctttcaacgagttttgaatcaaatcacttgataaatgtggagcatga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 tcaataccaatagctttcaacgagttttgaatcaaatcacttgataaatgtggagcatga 2364
Query: 628 acaaataaaagtttttgaatagacggaacagatgcttttcccttgagtttacctttttta 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 acaaataaaagtttttgaatagacggaacagatgcttttcccttgagtttacctttttta 2304
Query: 688 gcctctccgggcacaattgtgcttttggctttaacgtcggcttctttcaaccaatctgct 747
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2303 gcctctccaggcacaattgtgcttttggctttaacgtcagcttctttcaaccaatctgct 2244
Query: 748 atttcatttttcaaatatttcttatgatcaggaaaccgtaggttgaagttttggttaaat 807
|||| ||||| ||||||| |||| ||||| | ||||||| ||||||| ||||||||| |
Sbjct: 2243 attttattttcgaaatattccttaggatcaag-aaccgta-gttgaag-tttggttaatt 2187
Query: 808 tcttgcaaatttgcccatgtcattaaaattcaaccaacttt 848
|| |||||| ||| |||||||| |||||||| |||||||||
Sbjct: 2186 tc-tgcaaagttggccatgtca-taaaattc-accaacttt 2149
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8968
Number of Sequences: 1807
Number of extensions: 8968
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)