BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1546 0.0
>3x_Contig1803
Length = 52241
Score = 1546 bits (780), Expect = 0.0
Identities = 814/823 (98%), Gaps = 3/823 (0%)
Strand = Plus / Minus
Query: 86 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32707 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 32648
Query: 146 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32647 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 32588
Query: 206 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32587 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 32528
Query: 266 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32527 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 32468
Query: 326 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32467 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 32408
Query: 386 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32407 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 32348
Query: 446 gtggtgttgccactcctgccgatgccgctttattaatgcaatt--gggttgtgaaggtgt 503
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32347 gtggtgttgccactcctgccgatgccgctttattaatgcaattgcgggttgtgaaggtgt 32288
Query: 504 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32287 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 32228
Query: 564 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32227 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 32168
Query: 624 tgacctaatgggtggattgtcaatagaatccttgaagaactccgaaaaccctaaaaggtt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32167 tgacctaatgggtggattgtcaatagaatccttgaagaactccgaaaaccctaaaaggtt 32108
Query: 684 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32107 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 32048
Query: 744 agtaaagacgaacaaaagtttatattgatttttatatgctgctttgttaacaacttatca 803
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32047 agtaaagacgaacaaaagtttatattgattttataatgctgctttgttaacaacttatca 31988
Query: 804 aacaagagagtatcagctttacaatttaggagtccacaacctgattaaccagagaagctg 863
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 31987 aacaagagagtatcagctttacaatttaggagt-cacaacctgattaacgagagaagctg 31929
Query: 864 tataccatttttcaggccaatacttaataacgataaccaattg 906
||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 31928 tataccatttttcaggcaaatacttaataacgataacgaattg 31886
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6540
Number of Sequences: 1807
Number of extensions: 6540
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)