BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC48ZG04RM1.SCF screened BAC_end
         (913 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1100                                                        1580   0.0  

>3x_Contig1100 
          Length = 4703

 Score = 1580 bits (797), Expect = 0.0
 Identities = 854/868 (98%), Gaps = 4/868 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   gtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagttataag 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 gtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagttataag 1465

                                                                        
Query: 109  tattgatttcggtgagatttccttgctgtccactacttttaatttggacttctgaatcat 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 tattgatttcggtgagatttccttgctgtccactacttttaatttggacttctgaatcat 1405

                                                                        
Query: 169  ttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatccttcta 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 ttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatccttcta 1345

                                                                        
Query: 229  gtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcacttttcc 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 gtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcacttttcc 1285

                                                                        
Query: 289  acaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgcttccgtt 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 acaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgcttccgtt 1225

                                                                        
Query: 349  ttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatggatct 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 ttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatggatct 1165

                                                                        
Query: 409  ggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtcaaccgt 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 ggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtcaaccgt 1105

                                                                        
Query: 469  acgataaacctggacaccactgtataaataaaagtcctaacatattgaaaatttggccta 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 acgataaacctggacaccactgtataaataaaagtcctaacatattgaaaatttggccta 1045

                                                                        
Query: 529  tgagaactcagaaggagtgcatgattaacgcacttgtatgcagaaaccga-caggtgaac 587
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1044 tgagaactcagaaggagtgcatgattaacgcacttgtatgcagaaaccgagcaggtgaac 985

                                                                        
Query: 588  tctggaaactagaagtatttagaggcacaaatcagtattgagatgcccactgaacttatc 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  tctggaaactagaagtatttagaggcacaaatcagtattgagatgcccactgaacttatc 925

                                                                        
Query: 648  acttatgagcagaacttctcttctggtgtagatgctgaaaacgactaccctcctttggat 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  acttatgagcagaacttctcttctggtgtagatgctgaaaacgactaccctcctttggat 865

                                                                        
Query: 708  tccggcatgggcagtttccaagtttctgaacttgaacgtcaaggtgattcacattagcgt 767
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 864  tccggcatgggcagtttccaagtttctgaacttgaacgtcaaggtgattcacataagcgt 805

                                                                        
Query: 768  tcgaatgatgagatatcgnagcttcgagacgaaactcttaacggcagagagaaaaaacta 827
            |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804  tcgaatgatgagatatcggagctccgagacgaaactcttaacggcagagagaaaaaacta 745

                                                                        
Query: 828  cgacattcgggaaagca-ttcgagg-acagtacagggaatgcttcagttgaaagcatccc 885
            ||||| || |||||||| ||||||| |||||||||||||||||  |||||||   |||||
Sbjct: 744  cgacaatc-ggaaagcatttcgaggaacagtacagggaatgctcaagttgaagcaatccc 686

                                        
Query: 886  acatcatagcatttacgtagatcaaagc 913
            ||||||||||||| ||||||||||||||
Sbjct: 685  acatcatagcattaacgtagatcaaagc 658


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5854
Number of Sequences: 1807
Number of extensions: 5854
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)