BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG09RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 1495 0.0
>3x_Contig1713
Length = 18539
Score = 1495 bits (754), Expect = 0.0
Identities = 799/813 (98%), Gaps = 1/813 (0%)
Strand = Plus / Minus
Query: 47 atttccgttacccgcacttcccttttcccctatctagtatggaaatttgagaaccaaagc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14999 atttccgttacccgcacttcccttttcccctatctagtatggaaatttgagaaccaaagc 14940
Query: 107 gaaattatggaaagaactttagtatgaaggacaattgaaggacccaggtatttcagatcg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14939 gaaattatggaaagaactttagtatgaaggacaattgaaggacccaggtatttcagatcg 14880
Query: 167 atattaattgaccaatacagactgtataaaggcccaacaggtgtcaattgggtgtggata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14879 atattaattgaccaatacagactgtataaaggcccaacaggtgtcaattgggtgtggata 14820
Query: 227 atacggtgcaaaagttttaaatacagttttagcaatgtcttatttgaataacccagctgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14819 atacggtgcaaaagttttaaatacagttttagcaatgtcttatttgaataacccagctgt 14760
Query: 287 tgtcatggacaatggtaccggtttgacgaaacttgggtttgcaggtaacgattctccatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14759 tgtcatggacaatggtaccggtttgacgaaacttgggtttgcaggtaacgattctccatc 14700
Query: 347 gtgggtgtttcctacagcgattgcaacagcacaatctggtaagagccaaagttctagtaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14699 gtgggtgtttcctacagcgattgcaacagcacaatctggtaagagccaaagttctagtaa 14640
Query: 407 caagtctacagggtttggatcatcttctgccaatgctcagagctcttatttgtctggagg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14639 caagtctacagggtttggatcatcttctgccaatgctcagagctcttatttgtctggagg 14580
Query: 467 tgggaattcgacaagtgcaactgatttcaacagtttagccagctcgactttgatatcgaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14579 tgggaattcgacaagtgcaactgatttcaacagtttagccagctcgactttgatatcgaa 14520
Query: 527 taaccttgctggaaagagaggtaccgaggacttggacttttatattggtaacgaggcgct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14519 taaccttgctggaaagagaggtaccgaggacttggacttttatattggtaacgaggcgct 14460
Query: 587 agtagcatctcagggtccatcgtactcgttgagttatcctatcagacacggtcaagtgga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14459 agtagcatctcagggtccatcgtactcgttgagttatcctatcagacacggtcaagtgga 14400
Query: 647 aaactgggatcatatggaaaggtttttggaaaattccatctttaaatatttgagaacaga 706
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 14399 aaactgggatcatatggaaaggttttgggaaaattccatctttaaatatttgagaacaga 14340
Query: 707 accagaggatcacttcttcttgcttaccgaaccacctttgaattcaccagaaaatagaca 766
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14339 accagaggatcacttcttcttgcttaccgaaccacctttgaatccaccagaaaatagaca 14280
Query: 767 acaagttgcggaaatttacttttgaagttttatttgtgcagggttgtacattccagtgca 826
||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||
Sbjct: 14279 acaagttgcggaaattttctttgaaagttttaattgtgcagggttgtacatcgcagtgca 14220
Query: 827 agctgggtttgcccttggctgtnttttggactt 859
||||| | ||| ||||||||| | ||||||||
Sbjct: 14219 agctgtg-ttggccttggctgcttcttggactt 14188
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6386
Number of Sequences: 1807
Number of extensions: 6386
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)