BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG11RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1520 0.0
>3x_Contig1610
Length = 13981
Score = 1520 bits (767), Expect = 0.0
Identities = 829/844 (98%), Gaps = 5/844 (0%)
Strand = Plus / Plus
Query: 46 tacacatggtactaaacgaaggatttgtgaaagacaagtgttagttcaatacgtcagata 105
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2456 tacacatggtactaaacga-ggatttgtgaaagacaagtgttagttcaatacgtcagata 2514
Query: 106 tcgacactcactcaaaacacaatggtttctcaattattcgaagaaaaggtatgtggaatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 tcgacactcactcaaaacacaatggtttctcaattattcgaagaaaaggtatgtggaatc 2574
Query: 166 gttgttgcaatggcttttgatttcccttaataatcatactaaccgcatcttacatttatc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 gttgttgcaatggcttttgatttcccttaataatcatactaaccgcatcttacatttatc 2634
Query: 226 tgcaggctaaagctgtcaatgaattgccatcaactccaaataacgatgaattgttgaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2635 tgcaggctaaagctgtcaatgaattgccatcaactccaaataacgatgaattgttgaaat 2694
Query: 286 tgtatgctctatacaagcaagcaaccgtcggtgacaacaccaaggaaaaaccaggcatgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 tgtatgctctatacaagcaagcaaccgtcggtgacaacaccaaggaaaaaccaggcatgt 2754
Query: 346 tcaacttgaaggaccgttacaagtgggacgcctgggaattgttgaagggcacttcccaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 tcaacttgaaggaccgttacaagtgggacgcctgggaattgttgaagggcacttcccaag 2814
Query: 406 aagatgccgaacaacagtacatcgaattggttgaccaattgatcaagaaatacgccccat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 aagatgccgaacaacagtacatcgaattggttgaccaattgatcaagaaatacgccccat 2874
Query: 466 agagctggatggtctcgcaagttattgcatcatctaactaactatctatatctacatata 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 agagctggatggtctcgcaagttattgcatcatctaactaactatctatatctacatata 2934
Query: 526 tattatccttgatccatatagctaatgataatacccttattactcggtttgaaacacgaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2935 tattatccttgatccatatagctaatgataatacccttattactcggtttgaaacacgaa 2994
Query: 586 ttacaagtcacgtgaacaagctaacgccaactatttacccggctatttgcagttgagtgg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 ttacaagtcacgtgaacaagctaacgccaactatttacccggctatttgcagttgagtgg 3054
Query: 646 caaaaaattctttcttccctagcagtatataagttaccctccgttaaacaggagcacgat 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3055 caaaaaattctttcttccctagcagtatataagttaccctccgttaaacaggagcacgat 3114
Query: 706 ccctatttttctcttcatttatgngggtcatacattgtttttctaggcaatatattccgg 765
||||||||||||||||||||||| || |||||||||| |||||||||||||||| |||||
Sbjct: 3115 ccctatttttctcttcatttatggggttcatacattg-ttttctaggcaatata-tccgg 3172
Query: 766 ttaacagactcttttactttccatctgattccactcc-aatcgtagcacaaacgcgcttt 824
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3173 gtaacagactcttttactttccatctgattccactccaaatcgtagcacaaacgcgcttt 3232
Query: 825 aacagatgctacacagcttttttcttatnntttgcttattcccaagctccaagaaatttc 884
| |||||||||||||| |||||||||| |||||||||||||||||| ||| ||||||
Sbjct: 3233 acaagatgctacacagc-tttttcttattttttgcttattcccaagcttcaaagaatttc 3291
Query: 885 tttc 888
||||
Sbjct: 3292 tttc 3295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6900
Number of Sequences: 1807
Number of extensions: 6900
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)