BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG12FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 876 0.0
3x_Contig1374 462 e-130
3x_Contig1428 145 2e-34
3x_Contig1557 131 3e-30
3x_Contig1518 131 3e-30
3x_Contig1446 131 3e-30
3x_Contig1663 129 1e-29
3x_Contig1521 129 1e-29
>3x_Contig1593
Length = 10902
Score = 876 bits (442), Expect = 0.0
Identities = 483/494 (97%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 94 cctcggaacctgctaaagataccaaaaattcggacgaaccatctgatggtaagaagcaat 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 cctcggaacctgctaaagataccaaaaattcggacgaaccatctgatggtaagaagcaat 10464
Query: 154 aatcaccctcgttgttttgaatgatctattatttaacacaattcgttgatgactgcgaat 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 aatcaccctcgttgttttgaatgatctattatttaacacaattcgttgatgactgcgaat 10524
Query: 214 aaactttgtacggtttttatacttcatatttatcaaacttcatcatattcatttcaattc 273
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10525 aaactttgtacggttttgatacttcatatttatcaaacttcatcatattcatttcaattc 10584
Query: 274 cttctatgaaggttccaactttgcgatatctttttttcacatcaatctttccattccccc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10585 cttctatgaaggttccaactttgcgatatctttttttcacatcaatctttccattccccc 10644
Query: 334 tcccaacatactcatttatatgtcaacgttagtgacggtattggaaattattatatttaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10645 tcccaacatactcatttatatgtcaacgttagtgacggtattggaaattattatatttaa 10704
Query: 394 gtacaaataaaagctcagacactttcattcgaaaaattacaggcacaagttatctaacag 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10705 gtacaaataaaagctcagacactttcattcgaaaaattacaggcacaagttatctaacag 10764
Query: 454 atatatcactccagagcagctctg-tctccatattcgcggagattgattgaaacgcccat 512
|||||||||||||||||||||||| ||||||| ||||||||| | | ||| |||||||||
Sbjct: 10765 atatatcactccagagcagctctgttctccattttcgcggagttagtttgtaacgcccat 10824
Query: 513 gttaccattgcgctgccactaaagcggacggcactgagcggag-ttggataaattatatt 571
||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||
Sbjct: 10825 gttaccattgcgctgccactaaagcggacggcactgagcggtgtttggttaaatcatatt 10884
Query: 572 ccaatagccaaatg 585
||||||||||||||
Sbjct: 10885 ccaatagccaaatg 10898
>3x_Contig1374
Length = 8985
Score = 462 bits (233), Expect = e-130
Identities = 350/379 (92%), Gaps = 8/379 (2%)
Strand = Plus / Minus
Query: 570 ttccaatagccaaatgatttcaaatgatggacctctccactgaaccgcatgatggagctg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8975 ttccaatagccaaatgatttcaaatgatggacctctccactgaaccgcatgatggagctg 8916
Query: 630 tgaaaaactatattttcatccaaatatccgatatagtgtaacggctatcacatcacgctt 689
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 tgaaaa-ctatattttcatccaaatatccgatatagtgtaacggctatcacatcacgctt 8857
Query: 690 tcaccgtggagaccggngttcgactccccgtattcggag-tttctttttatttttttctt 748
|||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 8856 tcaccgtggagaccggggttcgactccccgta-tcggagttttctttttatttttttctt 8798
Query: 749 agctctcgttcggactggacttttgaaaatctcaaac-ttcctttattt-catacataca 806
|||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 8797 agctctcgttcggactggacttttgaaatcctcaaactttcctttatttacatacataca 8738
Query: 807 natatatatatatatatatatatatatattttgaccacgtttcactgtgttcacctggca 866
|||||||||||||||||||||||||||| | ||| ||||| |||| ||||||||||
Sbjct: 8737 tatatatatatatatatatatatatatatatagacaacgttacacttgtttcacctggc- 8679
Query: 867 aaaaagttggagcccttggttc-aacattcatattcagagccccaattggttgggggaaa 925
| |||| | ||| ||||||||| ||||| |||||||||||| ||||||| |||| |||
Sbjct: 8678 agaaagcttgag-ccttggttcaaacatacatattcagagcaccaattgtgtgggtgaag 8620
Query: 926 tgattatcaatctcttcaa 944
||||||||||||| |||||
Sbjct: 8619 tgattatcaatcttttcaa 8601
>3x_Contig1428
Length = 9146
Score = 145 bits (73), Expect = 2e-34
Identities = 85/88 (96%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 654 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggngttcgac 713
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6456 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgac 6397
Query: 714 tccccgtattcggagtttctttttattt 741
|||||||| ||||||| |||||||||||
Sbjct: 6396 tccccgta-tcggagtatctttttattt 6370
>3x_Contig1557
Length = 10562
Score = 131 bits (66), Expect = 3e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 654 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggngttcgac 713
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2540 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgac 2599
Query: 714 tccccgtat 722
|||||||||
Sbjct: 2600 tccccgtat 2608
>3x_Contig1518
Length = 11021
Score = 131 bits (66), Expect = 3e-30
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 654 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggngttcgac 713
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5819 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgac 5760
Query: 714 tccccgtat 722
|||||||||
Sbjct: 5759 tccccgtat 5751
>3x_Contig1446
Length = 10598
Score = 131 bits (66), Expect = 3e-30
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 654 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggngttcgac 713
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3306 tatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgac 3247
Query: 714 tccccgtat 722
|||||||||
Sbjct: 3246 tccccgtat 3238
>3x_Contig1663
Length = 13533
Score = 129 bits (65), Expect = 1e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 655 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggngttcgact 714
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 856 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 915
Query: 715 ccccgtat 722
||||||||
Sbjct: 916 ccccgtat 923
>3x_Contig1521
Length = 8057
Score = 129 bits (65), Expect = 1e-29
Identities = 73/76 (96%)
Strand = Plus / Minus
Query: 647 atccaaatatccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggn 706
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4305 atccaagtgtccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggg 4246
Query: 707 gttcgactccccgtat 722
||||||||||||||||
Sbjct: 4245 gttcgactccccgtat 4230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,619
Number of Sequences: 1807
Number of extensions: 16619
Number of successful extensions: 3715
Number of sequences better than 1.0e-20: 8
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)