BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZG12RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig871 1511 0.0
>3x_Contig871
Length = 4172
Score = 1511 bits (762), Expect = 0.0
Identities = 826/842 (98%), Gaps = 4/842 (0%)
Strand = Plus / Plus
Query: 51 atttgaaatccatctatagatacgcccttgttgctctgcaacatcttgtttcaatctgga 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 atttgaaatccatctatagatacgcccttgttgctctgcaacatcttgtttcaatctgga 2661
Query: 111 agcaatgatatctctgtccaagtcacgagcatcaaagttattgtaatcctctaattgtgt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 agcaatgatatctctgtccaagtcacgagcatcaaagttattgtaatcctctaattgtgt 2721
Query: 171 ttgacggtcctgttcagtgcttgcggtcgccagagaatcgccaatatcttcagcttcagc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 ttgacggtcctgttcagtgcttgcggtcgccagagaatcgccaatatcttcagcttcagc 2781
Query: 231 ctttaaattctctaaatattgtttagccaatcttcttctcttatcagcagggttttcgcc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 ctttaaattctctaaatattgtttagccaatcttcttctcttatcagcagggttttcgcc 2841
Query: 291 ttcaaactcgtcttcagattccaagtattctgctacctcatcgccatcattggattcatc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 ttcaaactcgtcttcagattccaagtattctgctacctcatcgccatcattggattcatc 2901
Query: 351 ttggacatcaccttcatcagaagaaatatccgtgatttcctcatctacctcttcgacaga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 ttggacatcaccttcatcagaagaaatatccgtgatttcctcatctacctcttcgacaga 2961
Query: 411 atccctattacgtttttttgagacattgcttgtactagatctagccatggtgtacttggt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 atccctattacgtttttttgagacattgcttgtactagatctagccatggtgtacttggt 3021
Query: 471 ggccctctggttgctgtctcgtctggtttagttgcagctcatcgcctgtttcaatgatgt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 ggccctctggttgctgtctcgtctggtttagttgcagctcatcgcctgtttcaatgatgt 3081
Query: 531 tggttcagatgtacaatttttttttcagtatcgccaatttgtaaaagaaacgacaccact 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 tggttcagatgtacaatttttttttcagtatcgccaatttgtaaaagaaacgacaccact 3141
Query: 591 tgaaaagtgacaaaaattgaagaatgcatgaacttgcaacagaattaaataatagtttgg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3142 tgaaaagtgacaaaaattgaagaatgcatgaacttgcaacagaattaaataatagtttgg 3201
Query: 651 aagactttactcgattcaacgacctatatgcctgatttcattggtattgctagaattact 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3202 aagactttactcgattcaacgacctatatgcctgatttcattggtattgctagaattact 3261
Query: 711 taatttaaattacattacggcagataatgaacg-ccatgcacggatcggaaaatc-atta 768
|| ||||| ||||||||||||||| |||||||| | ||||||||||||||||||| ||||
Sbjct: 3262 tagtttaatttacattacggcagaaaatgaacgtcaatgcacggatcggaaaatcaatta 3321
Query: 769 ttatttaaactgacattacttattctagtccagataagaagaacaggggattatc-tttt 827
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3322 ttatttaaactgacaatacttattctagtccagataagaagaacaggggattatcatata 3381
Query: 828 ttattggaatcggccttaaatttggcctcaataatccgggtggattttttttactagtgg 887
|||||| ||||||||| |||||||||||||||||| || || ||||||| ||||||||||
Sbjct: 3382 ttattgaaatcggcctcaaatttggcctcaataat-cgtgttgatttttcttactagtgg 3440
Query: 888 aa 889
||
Sbjct: 3441 aa 3442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8549
Number of Sequences: 1807
Number of extensions: 8549
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)