BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH01FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1061 0.0
>3x_Contig1654
Length = 17174
Score = 1061 bits (535), Expect = 0.0
Identities = 570/579 (98%), Gaps = 2/579 (0%)
Strand = Plus / Minus
Query: 87 tgattttgatatcaataaacgtcgattcgaagcctgctgcctttattaaattatcacgtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7237 tgattttgatatcaataaacgtcgattcgaagcctgctgcctttattaaattatcacgtt 7178
Query: 147 cttcagctgtcaaatccatattatccaagagaaattttaggatattgctgacatcgttag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7177 cttcagctgtcaaatccatattatccaagagaaattttaggatattgctgacatcgttag 7118
Query: 207 aaatgttttcattatgttgtaggtaatcattgacctcctccaacattgtttcgtactcat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7117 aaatgttttcattatgttgtaggtaatcattgacctcctccaacattgtttcgtactcat 7058
Query: 267 ccttatttcgtactaattcttctttcaatctgattaactctttattcttgtcctccaatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 ccttatttcgtactaattcttctttcaatctgattaactctttattcttgtcctccaatg 6998
Query: 327 tgattactagttttacattctgctctcgaagtaaaggagaatcttcgacctcttcgatgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6997 tgattactagttttacattctgctctcgaagtaaaggagaatcttcgacctcttcgatgt 6938
Query: 387 tggtatttgcatgactctcaaaatcgtttgtaatgttttctgtattttgggtagcctgca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6937 tggtatttgcatgactctcaaaatcgtttgtaatgttttctgtattttgggtagcctgca 6878
Query: 447 atttttgatcgttattgaaattaacttgcttttagatctcggtcaaggccttaactttca 506
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6877 atttttgatcgttattgaaattaacttgctttaagatctcggtcaaggccttaactttca 6818
Query: 507 ctctgtactgtaccaattgtctctttaaaacatcagtttcactagtcatcaaatgcgaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 ctctgtactgtaccaattgtctctttaaaacatcagtttcactagtcatcaaatgcgaat 6758
Query: 567 ctgctatattaggtggataaaagtcatttatggtcccaccctgcacccgttgtggagata 626
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 6757 ctgctatattaggtggataaaagtcatttatggtcccacgctgcaaccgttgtgtagata 6698
Query: 627 cctttcttggaatatttcggaaacccgatttttttcatg 665
|||||||| |||| |||||||| ||||| |||||||||
Sbjct: 6697 cctttctt-gaatcattcggaaa-ccgatatttttcatg 6661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,981
Number of Sequences: 1807
Number of extensions: 14981
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)