BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH01RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1578 0.0
>3x_Contig1584
Length = 9710
Score = 1578 bits (796), Expect = 0.0
Identities = 859/872 (98%), Gaps = 6/872 (0%)
Strand = Plus / Plus
Query: 51 aagcttaacaagggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagc 110
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3979 aagcttaacaagg-aaaaaggccagccaggattcattctacgtgtgttcgcattcccagc 4037
Query: 111 gttgttagacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaat 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4038 gttgttagacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaat 4097
Query: 171 catgagaagctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4098 catgagaagctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctg 4157
Query: 231 gttcctagaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtgg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4158 gttcctagaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtgg 4217
Query: 291 tggtatgcacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4218 tggtatgcacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaa 4277
Query: 351 cttgacggattttggaattttctagatcaactattcgtaccttaaaaatggactttcagt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4278 cttgacggattttggaattttctagatcaactattcgtaccttaaaaatggactttcagt 4337
Query: 411 atggaaaaatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4338 atggaaaaatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacc 4397
Query: 471 tttaattcttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4398 tttaattcttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatat 4457
Query: 531 gtatatatatgcacatacatacccacacacagataggagtaaatatctttcacttgtttt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 gtatatatatgcacatacatacccacacacagataggagtaaatatctttcacttgtttt 4517
Query: 591 atgcattttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacat 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 atgcattttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacat 4577
Query: 651 tggaagcgagagatggtcgttcataatcctaacaattggcattgggtcgataagaactgt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 tggaagcgagagatggtcgttcataatcctaacaattggcattgggtcgataagaactgt 4637
Query: 711 attgactgggcaaagaaatacttccaagaaaaattggttggtttgactaccggagaatca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 attgactgggcaaagaaatacttccaagaaaaattggttggtttgactaccggagaatca 4697
Query: 771 acagatgaactgtatggcagaaattac-aagctatcatcattagaaggtgattgccaagg 829
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||
Sbjct: 4698 acagatgaactgtat-gcagaaattacaaagctatcatcattagaaggtgattg-cgagg 4755
Query: 830 tg-accaccggaagggtaaggggattcctttatttgatttgaaattgaatggtggtattg 888
|| |||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 4756 tgaaccaacggaagggtaaggtgatttctttatttgatttgaaattgaatgttggtattg 4815
Query: 889 cgggtcctgttgggtgaaaacaaatttgaagg 920
|||||| || |||||||||||||||| |||||
Sbjct: 4816 cgggtcatg-tgggtgaaaacaaattagaagg 4846
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8079
Number of Sequences: 1807
Number of extensions: 8079
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)