BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH02FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1227 0.0
>3x_Contig1515
Length = 8855
Score = 1227 bits (619), Expect = 0.0
Identities = 685/706 (97%), Gaps = 1/706 (0%)
Strand = Plus / Minus
Query: 87 aagaaactgatagaagtccatgtttgacccgtattttgtgtgcaattcctgctgtaattg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6888 aagaaactgatagaagtccatgtttgacccgtattttgtgtgcaattcctgctgtaattg 6829
Query: 147 gaaaatttcaatctcatccctagtgaaacaataggctactgcggcaaatagcgaaagaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6828 gaaaatttcaatctcatccctagtgaaacaataggctactgcggcaaatagcgaaagaaa 6769
Query: 207 aagcgcataagtaacaggtctggatgaagatagcattttccgtatatctggaccttgatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6768 aagcgcataagtaacaggtctggatgaagatagcattttccgtatatctggaccttgatg 6709
Query: 267 gattccttataaacaatttattcgatcaatttatagcttgataatgcactttttattagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6708 gattccttataaacaatttattcgatcaatttatagcttgataatgcactttttattagt 6649
Query: 327 ttaatgctctttcatttaaacatcttggccttgagttttattttcgttcaatacatgaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6648 ttaatgctctttcatttaaacatcttggccttgagttttattttcgttcaatacatgaat 6589
Query: 387 ttcaaaccgttctttcatataaataaacaatccagttattttcataacgggaaattcata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6588 ttcaaaccgttctttcatataaataaacaatccagttattttcataacgggaaattcata 6529
Query: 447 aactgcgtctcatacaatactgattatgggcttgttatcaattggtattctctcagctga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6528 aactgcgtctcatacaatactgattatgggcttgttatcaattggtattctctcagctga 6469
Query: 507 tatttaatgctagtatttacttcatcagaattcattccatatattatacgatgaatgcta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6468 tatttaatgctagtatttacttcatcagaattcattccatatattatacgatgaatgcta 6409
Query: 567 ctagaagacaacagccaaggaggctggttgttaagctatatcagtttttccatatatcaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408 ctagaagacaacagccaaggaggctggttgttaagctatatcagtttttccatatatcaa 6349
Query: 627 gcgcctttttatattgcgctttgttagttcgttgggttggtcttctttcattgttctcgc 686
||||||| ||||||||||||||||||||||||||| | | ||||||| ||||| ||||||
Sbjct: 6348 gcgccttcttatattgcgctttgttagttcgttggttggttcttcttccattggtctcgc 6289
Query: 687 ggaagtttttaccaggaggaattcataggtttctatggttgttgatgggatactcaacgg 746
| |||| | |||||||||||||||||||||||||||| | ||||||| ||||||| |||
Sbjct: 6288 gaaagtatctaccaggaggaattcataggtttctatgttgtttgatggtatactcagcgg 6229
Query: 747 gcgggaacattttatggnggatt-aaatgcaagggctggcctggtc 791
||| |||||| ||||| ||||| |||||| ||| |||||||||||
Sbjct: 6228 tcggtaacattctatggtggattaaaatgcgaggcctggcctggtc 6183
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7292
Number of Sequences: 1807
Number of extensions: 7292
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)