BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH03RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig729 1142 0.0
>3x_Contig729
Length = 2040
Score = 1142 bits (576), Expect = 0.0
Identities = 603/611 (98%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 331 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 60
Query: 391 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 120
Query: 451 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 180
Query: 511 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 240
Query: 571 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 300
Query: 631 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 360
Query: 691 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 420
Query: 751 aggaactgttcctgaatggtttcgcaggtatttgtaaatagaaactacttttgtcgtttt 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggaactgttcctgaatggtttcgcaggtatttgtaaatagaaactacttttgtcgtttt 480
Query: 811 accttgtttaataggtatacaatttctt-aaatataaagctctacggttcagaactgtga 869
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 481 accttgtttaataggtatacaatttcttaaaatataaagctctacggttcagaactgtga 540
Query: 870 gcaatcgctgctagcccaattctcagaattcaatcttgattgtcaccgatnaggaaaatg 929
|||||||||||||||| | |||||||||||||||| ||| |||||||||| || ||||||
Sbjct: 541 gcaatcgctgctagccaatttctcagaattcaatcatgaatgtcaccgataagaaaaatg 600
Query: 930 gaactaccaac 940
||||||||||
Sbjct: 601 aaactaccaac 611
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5594
Number of Sequences: 1807
Number of extensions: 5594
Number of successful extensions: 23
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)