BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH04FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1322 0.0
>3x_Contig1707
Length = 16216
Score = 1322 bits (667), Expect = 0.0
Identities = 732/750 (97%), Gaps = 3/750 (0%)
Strand = Plus / Minus
Query: 87 tggatttggggaccttttatactgagatcctgtatcactcaaagatgatgaagaaccagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6872 tggatttggggaccttttatactgagatcctgtatcactcaaagatgatgaagaaccagt 6813
Query: 147 caaatcagtaggttgtatattagctttttggcggagggacgattgactctttttaatcgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6812 caaatcagtaggttgtatattagctttttggcggagggacgattgactctttttaatcgc 6753
Query: 207 caaatctgggaatagtttagagattatcttctgtgtcacaccggaatttgcatgacttaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6752 caaatctgggaatagtttagagattatcttctgtgtcacaccggaatttgcatgacttaa 6693
Query: 267 tctttttaaagtatttaatgccaaagaattcgtcgccgtcatttggttcttgtattcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6692 tctttttaaagtatttaatgccaaagaattcgtcgccgtcatttggttcttgtattcaaa 6633
Query: 327 ttcagttcgtggtaaattagagttcggagatgaagatagctgagcgaacaccttctcttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6632 ttcagttcgtggtaaattagagttcggagatgaagatagctgagcgaacaccttctcttt 6573
Query: 387 gaaagctggttgaaggacagcattagtggattttggtttcatccatgtgatagtatcaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6572 gaaagctggttgaaggacagcattagtggattttggtttcatccatgtgatagtatcaat 6513
Query: 447 gtggttagtattccccttggacttcgatactgtacgtctattccaatcattcttactctc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6512 gtggttagtattccccttggacttcgatactgtacgtctattccaatcattcttactctc 6453
Query: 507 tttagaagagcggaactccgcagcaagagcagcatccatatgcattgagtaagggccact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6452 tttagaagagcggaactccgcagcaagagcagcatccatatgcattgagtaagggccact 6393
Query: 567 ctgaacttcgaaagcagcagaatcgtaagattccataaaatctgatacagagttgcattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6392 ctgaacttcgaaagcagcagaatcgtaagattccataaaatctgatacagagttgcattt 6333
Query: 627 gtcgtttatttttatggattgtaaggcaatttcctcttttagttcagtttcagttaatcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6332 gtcgtttatttttatggattgtaaggcaatttcctcttttagttcagtttcagttaatcc 6273
Query: 687 catcattataacgttgtatattttacatctgggtcgncatttcacattagctctggaaga 746
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 6272 catcattaaaacgttgtatattttacatctgggtcgccattcaacattagctctggaaga 6213
Query: 747 atcattcccagaggattttacttaccaagtttggcgtgcaataatggaatttggcctttg 806
|||||| ||||| | | |||||| | || |||||||||||||||| || |||| |||||
Sbjct: 6212 atcatt-ccagaaggatatacttaaccaggttggcgtgcaataatgtaa-ttggtctttg 6155
Query: 807 tagtccctttaacgtaacaaccggaactat 836
||||| || ||||||||||| |||||||||
Sbjct: 6154 tagtctctataacgtaacaa-cggaactat 6126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)