BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH07FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1526 1554 0.0
>3x_Contig1526
Length = 11842
Score = 1554 bits (784), Expect = 0.0
Identities = 808/816 (99%)
Strand = Plus / Plus
Query: 89 tagagtttgctttgcattcaatcaagaacattccattgttctcagtcgaaaagatgtata 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6010 tagagtttgctttgcattcaatcaagaacattccattgttctcagtcgaaaagatgtata 6069
Query: 149 attctctattccaactttacatcttgtggattggagcttattcatgttcaaaggacagag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6070 attctctattccaactttacatcttgtggattggagcttattcatgttcaaaggacagag 6129
Query: 209 acgagacaaaactacgagtatatcaagaattgttcacaaaatgggcttcaatgtcatgtt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6130 acgagacaaaactacgagtatatcaagaattgttcacaaaatgggcttcaatgtcatgtt 6189
Query: 269 cgattctacctgatattaaccaagtacaagaattacttgatgaaatagctcaaccagctg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6190 cgattctacctgatattaaccaagtacaagaattacttgatgaaatagctcaaccagctg 6249
Query: 329 ttttgaaaactggtaattcaatggatatgatatgggaggaagtaagaagagcttatccat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6250 ttttgaaaactggtaattcaatggatatgatatgggaggaagtaagaagagcttatccat 6309
Query: 389 tgactgcagaaacctgggatattttgaagcaatttgagtcattatcgggtgactttgacc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6310 tgactgcagaaacctgggatattttgaagcaatttgagtcattatcgggtgactttgacc 6369
Query: 449 agatggtgaagaaacaattttttgactcttaccctctaattagtcagttgtcagaaacat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370 agatggtgaagaaacaattttttgactcttaccctctaattagtcagttgtcagaaacat 6429
Query: 509 ttaatgcccttttcatggacattttaaacaacaatacagcagaatctgaaaacattttag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6430 ttaatgcccttttcatggacattttaaacaacaatacagcagaatctgaaaacattttag 6489
Query: 569 agaagctcaaggaggggatttcaactctcaataccatttcgtctacatttttgatcaaaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6490 agaagctcaaggaggggatttcaactctcaataccatttcgtctacatttttgatcaaaa 6549
Query: 629 ggaaacactattttgaggatgaattcacgtcattattgagatttttagtgaatgacttcg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6550 ggaaacactattttgaggatgaattcacgtcattattgagatttttagtgaatgacttcg 6609
Query: 689 aggagaccaagaaaaccatttatgccatattacccaactcttctgtcgctagcatggatc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6610 aggagaccaagaaaaccatttatgccatattacccaactcttctgtcgctagcatggatc 6669
Query: 749 tcatcaaactggaattcgttgggactttgtacccttcccatttcagcttactttggaaga 808
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 6670 tcatcaaactggaatccgttgggactctgtaccctcccattttcagcttactttggaaga 6729
Query: 809 aggagaatgggaaatttgtttcacatacaaaggctgttttcagccctgtacttattgaaa 868
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 6730 aggagaatgggaaatttgtttcacatacaaaggctgttttcagccctgtactaattgaga 6789
Query: 869 acatcttaattaagtcttacgatttttacgaattct 904
||||||||||||||||| ||||||||||||||||||
Sbjct: 6790 acatcttaattaagtctaacgatttttacgaattct 6825
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7158
Number of Sequences: 1807
Number of extensions: 7158
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)