BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH07RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1509 0.0
>3x_Contig1775
Length = 26320
Score = 1509 bits (761), Expect = 0.0
Identities = 834/854 (97%), Gaps = 5/854 (0%)
Strand = Plus / Plus
Query: 53 tgaataatccatcatcaaggtaatgaacaaccctcacggcaataccttttgttcca-taa 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3967 tgaataatccatcatcaaggtaatgaacaaccctcacggcaataccttttgttccaataa 4026
Query: 112 cgtgtgatattccgcagagatccatttctgcgataccaatagcttttactaataatgggt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4027 cgtgtgatattccgcagagatccatttctgcgataccaatagcttttactaataatgggt 4086
Query: 172 cctttgtagatgcaatcccaacaattgagcctcttttcacgtttgaaggaaatggaggaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4087 cctttgtagatgcaatcccaacaattgagcctcttttcacgtttgaaggaaatggaggaa 4146
Query: 232 ctgtgccaggtaacatcaattgggcacctcctaggatgtgtttttcaatgacaaagtcat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4147 ctgtgccaggtaacatcaattgggcacctcctaggatgtgtttttcaatgacaaagtcat 4206
Query: 292 gagttaagatgatcggaagtaactgcatttgaagattccataatgagaagatagtaggat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4207 gagttaagatgatcggaagtaactgcatttgaagattccataatgagaagatagtaggat 4266
Query: 352 acaattgatcctcaaactttgttttaaaccagattggcttattactctcatcggtgtaaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 acaattgatcctcaaactttgttttaaaccagattggcttattactctcatcggtgtaaa 4326
Query: 412 tggagccagcaacatttgctacttgaaaactcgtttg--tttgataacagctgttggcaa 469
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4327 tggagccagcaacatttgctacttgaaaactcgttttgttttgataacagctgttggcaa 4386
Query: 470 attgtattcctcattaatctgtcttttaatggtcgattgtaacttcttgcggtcactgtt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 attgtattcctcattaatctgtcttttaatggtcgattgtaacttcttgcggtcactgtt 4446
Query: 530 tttgagattcgacaaaggcttaatatgaggctctttggcaaacatagtcaaatattcggt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 tttgagattcgacaaaggcttaatatgaggctctttggcaaacatagtcaaatattcggt 4506
Query: 590 ctcttgggttgctgccaccgtcactaacgaattatgggcttgcttctattctttttctat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 ctcttgggttgctgccaccgtcactaacgaattatgggcttgcttctattctttttctat 4566
Query: 650 atgcaattaaactgntcttattgttaagaatagtttctgaaccttaaactgtacatttac 709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 atgcaattaaactgttcttattgttaagaatagtttctgaaccttaaactgtacatttac 4626
Query: 710 tttttttaagagttagagatgtatanacagtaatattatacaataatatagtggaattct 769
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4627 tttttttaagagttagagatgtataaacagtaatattatacaataatatagtggaattct 4686
Query: 770 gaaataaagcttacaatatcacatttataaatagaagcacgaggatatagta-cttttct 828
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 4687 gaaataaagctacaaatatcacattaataaatagaagcacgagaatatagtaccttttct 4746
Query: 829 tttcgctcttacaattttagatcaagaatgttctttcaccatagattcggaactattact 888
|| ||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||
Sbjct: 4747 ttcggctctcacaatttaggatcaagaatg-tccttcagcatagattcggaactattact 4805
Query: 889 acagaaatacgctt 902
||||||||||||||
Sbjct: 4806 acagaaatacgctt 4819
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6822
Number of Sequences: 1807
Number of extensions: 6822
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)