BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH08FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 1477 0.0
>3x_Contig1624
Length = 12551
Score = 1477 bits (745), Expect = 0.0
Identities = 793/805 (98%), Gaps = 3/805 (0%)
Strand = Plus / Plus
Query: 86 taagaaccgtgagaagcttttgtgatcgttcgcttaaagcctactttttctctatcgtca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11715 taagaaccgtgagaagcttttgtgatcgttcgcttaaagcctactttttctctatcgtca 11774
Query: 146 ctgagacagacgcagcaaaaacttcttacttctaagataaagaagaatacctcactacag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11775 ctgagacagacgcagcaaaaacttcttacttctaagataaagaagaatacctcactacag 11834
Query: 206 atgcttcaactgtcgggagaagtagcacaaaagaaattttaaatgtctacaaagaacctc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11835 atgcttcaactgtcgggagaagtagcacaaaagaaattttaaatgtctacaaagaacctc 11894
Query: 266 tacgttgatttatggcttcatagcagacgcccctccccttcacagaatctaatgaggatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11895 tacgttgatttatggcttcatagcagacgcccctccccttcacagaatctaatgaggatt 11954
Query: 326 ccctcagtcaccgaacgttgtcgtcattctgtaataataaccaaaagaaaaatgtaacca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11955 ccctcagtcaccgaacgttgtcgtcattctgtaataataaccaaaagaaaaatgtaacca 12014
Query: 386 caagcatggagtacccaaaggaatactgcaatggagtatgcgcagtgatgccctatcccc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12015 caagcatggagtacccaaaggaatactgcaatggagtatgcgcagtgatgccctatcccc 12074
Query: 446 ccaatccgctcagttgctcatatagtcagttgatgcttctttgtcagaaaggtagcacca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12075 ccaatccgctcagttgctcatatagtcagttgatgcttctttgtcagaaaggtagcacca 12134
Query: 506 aattacaaagcgatgagcttttgtgaaaagtccatcggtttatttacatttttcctaaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12135 aattacaaagcgatgagcttttgtgaaaagtccatcggtttatttacatttttcctaaaa 12194
Query: 566 cgtaaatatgcatagttgtttacctttttccttattaggaagtgttcgatcaataaagaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12195 cgtaaatatgcatagttgtttacctttttccttattaggaagtgttcgatcaataaagaa 12254
Query: 626 atcaggccgtagcatgagtgcaaacacaggacctggctctggccctattcctggcactgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12255 atcaggccgtagcatgagtgcaaacacaggacctggctctggccctattcctggcactgg 12314
Query: 686 ctgtttttctccctagcgaagttaagactattcatacgcgcgatcgttggtgaattccag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12315 ctgtttttctccctagcgaagttaagactattcatacgcgcgatcgttggtgaattccag 12374
Query: 746 ctggcaaatgctgtttgtggttttctctgtgcaccatttttaagatgaccattgctataa 805
||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 12375 ctgcaaaatgctgtttgt-gttttctctgtgcaccattttaaagatgacaattgctataa 12433
Query: 806 acgattattaagccacttgtatatagtatagacacgaacgcattgaactagggttggttg 865
||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 12434 acgataattaagcaacttgtatatagtatagacacgacggcattgaacta-ggttggttg 12492
Query: 866 t-aacgcatttttttttttgggggt 889
| ||||||| |||||||||||||||
Sbjct: 12493 taaacgcatctttttttttgggggt 12517
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,987
Number of Sequences: 1807
Number of extensions: 10987
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)