BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH08RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1618 0.0
>3x_Contig1648
Length = 16375
Score = 1618 bits (816), Expect = 0.0
Identities = 879/892 (98%), Gaps = 6/892 (0%)
Strand = Plus / Plus
Query: 47 agaagatgtagagaaatatttccatgggaaagtggtatcagttccgtttgtggatccaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7212 agaagatgtagagaaatatttccatgggaaagtggtatcagttccgtttgtggatccaaa 7271
Query: 107 accacaagcgaagaacacacagtacaaattcaattatttaaagccggacgtgagtttaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7272 accacaagcgaagaacacacagtacaaattcaattatttaaagccggacgtgagtttaat 7331
Query: 167 tggatcattcgggttgaagactgccatctaccaacctcagggctccgcagtagacgtttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7332 tggatcattcgggttgaagactgccatctaccaacctcagggctccgcagtagacgtttt 7391
Query: 227 gttgactatgcctgagcagttgttcgaaaagaaagatttcttgaattttagatgtttcca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7392 gttgactatgcctgagcagttgttcgaaaagaaagatttcttgaattttagatgtttcca 7451
Query: 287 caagcgttcagtatacctcgcgtatttgactcatcatatctcactcgtcctgaaaagaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7452 caagcgttcagtatacctcgcgtatttgactcatcatatctcactcgtcctgaaaagaag 7511
Query: 347 ccagctggatttcttacacttggaatattcatactttaacaacgatcctttacaaacggt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7512 ccagctggatttcttacacttggaatattcatactttaacaacgatcctttacaaacggt 7571
Query: 407 attaaagataagttgtaaggagaaaacttcatcggactataatttctacaagactaaatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7572 attaaagataagttgtaaggagaaaacttcatcggactataatttctacaagactaaatt 7631
Query: 467 cagcataaacttgatcgtggggttcccatacaatttcttcgaatcaaagaagttgctacc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 cagcataaacttgatcgtggggttcccatacaatttcttcgaatcaaagaagttgctacc 7691
Query: 527 caataagaactgtatcagagtcggtcaggataacgaaactccgacacctttctacaattt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 caataagaactgtatcagagtcggtcaggataacgaaactccgacacctttctacaattt 7751
Query: 587 ctcggtattatcatcttcttgtcacgaacactatttgaagtacttacacaaatcaaagaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 ctcggtattatcatcttcttgtcacgaacactatttgaagtacttacacaaatcaaagaa 7811
Query: 647 acaaacagaacagtttaaacaggcttgtattttggggaagctatggttatctcagagagg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7812 acaaacagaacagtttaaacaggcttgtattttggggaagctatggttatctcagagagg 7871
Query: 707 cttctcatcaaatatgtctcattcagatgcgttgggtggttttggaaatttcgagtttgc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7872 cttctcatcaaatatgtctcattcagatgcgttgggtggttttggaaatttcgagtttgc 7931
Query: 767 cacgttgatggcagccctactaaatggtggtggggttgatggtaacagaattttattgca 826
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 7932 cacgttgatggcagccctactaaatggtggtgggttgaatggtaacagaattttattgca 7991
Query: 827 ttggttcctcatctta-caattatttaaaggtgtaatcaaatatttggccacaatgggat 885
| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 7992 tgggtt-ctcatcttaccaattattcaaaggtgtaatcaaatatttggccacaat-ggat 8049
Query: 886 ctttgtactgagtgggtactttacaaatttttttccgactatagcactactg 937
||||||||||| ||||||| |||| |||| | ||||||||||||||||||||
Sbjct: 8050 ctttgtactga-tgggtac-ttac-aattctattccgactatagcactactg 8098
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7332
Number of Sequences: 1807
Number of extensions: 7332
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)